RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 EP400NLQ6ZTU2 488 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 SLF1Q9BQI6 1058 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 DBNDD1Q9H9R9 158 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 LRRC4Q9HBW1 653 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 NCOA3Q9Y6Q9 1424 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ASB14A6NK59 587 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 SCP2P22307 547 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ADAM9Q13443 819 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 E2F5Q15329 346 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 EXOC3L4Q17RC7 722 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 PDXDC2PQ6P474 469 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RNF207Q6ZRF8 634 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 SDCCAG8Q86SQ7 713 aaPredicted RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 CCDC24Q8N4L8 307 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 KRT12Q99456 494 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 TRIM56Q9BRZ2 755 aaKnown RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 KCNJ14Q9UNX9 436 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 CLTCL1P53675 1640 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 CLRN2A0PK11 232 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RAD17O75943 681 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 ABL1P00519 1130 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 TCP1P17987 556 aaKnown RBP9.32□□□□□ -0.92
PTPN3-204ENST00000446349 RPS6KA2Q15349 733 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 TKFCQ3LXA3 575 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 CEP170P1Q96L14 293 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 DNAJC5Q9H3Z4 198 aa9.32□□□□□ -0.92
PTPN3-204ENST00000446349 PRPF3O43395 683 aaKnown RBP9.31□□□□□ -0.92
PTPN3-204ENST00000446349 PHKA2P46019 1235 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 SEPT14Q6ZU15 432 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 MAP3K7O43318 606 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 ZBED2Q9BTP6 218 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 KATNAL1Q9BW62 490 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 ZHX1Q9UKY1 873 aaPredicted RBP9.31□□□□□ -0.92
PTPN3-204ENST00000446349 DLC1Q96QB1 1528 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 FKBP3Q00688 224 aaKnown RBP9.31□□□□□ -0.92
PTPN3-204ENST00000446349 KRT76Q01546 638 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 SPATA1Q5VX52 437 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 RRAGAQ7L523 313 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 RAB44Q7Z6P3 723 aaPredicted RBP9.31□□□□□ -0.92
PTPN3-204ENST00000446349 PRPF38AQ8NAV1 312 aaKnown RBP9.31□□□□□ -0.92
PTPN3-204ENST00000446349 TSC1Q92574 1164 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 SPZ1Q9BXG8 430 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 VCX3BQ9H321 246 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 EHD2Q9NZN4 543 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 TRIM42Q8IWZ5 723 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 FBXO18Q8NFZ0 1043 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 CRAMP1Q96RY5 1269 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 TIPINQ9BVW5 301 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 ANKFY1Q9P2R3 1169 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 TLDC2A0PJX2 215 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 PTGDRQ13258 359 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 NELFCDQ8IXH7 590 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 MAP4K1Q92918 833 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 LRRC24Q50LG9 513 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 CACNA2D3Q8IZS8 1091 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 DISC1Q9NRI5 854 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 LMTK2Q8IWU2 1503 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 ERICH4A6NGS2 130 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 CA4P22748 312 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 ATP11AP98196 1134 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 KARSQ15046 597 aaKnown RBP9.31□□□□□ -0.92
PTPN3-204ENST00000446349 ARHGAP44Q17R89 818 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 PLEKHF1Q96S99 279 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 TBC1D7Q9P0N9 293 aa9.31□□□□□ -0.92
PTPN3-204ENST00000446349 KDM6AO15550 1401 aaPredicted RBP9.3□□□□□ -0.92
PTPN3-204ENST00000446349 CEP104O60308 925 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 RPS12P25398 132 aaKnown RBP9.3□□□□□ -0.92
PTPN3-204ENST00000446349 CRKP46108 304 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 SREBF2Q12772 1141 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 TMEM106CQ9BVX2 250 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 KIAA1024Q9UPX6 916 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 PCDHB4Q9Y5E5 795 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 SPDYE16A6NNV3 312 aaPredicted RBP9.3□□□□□ -0.92
PTPN3-204ENST00000446349 USP17L10C9JJH3 530 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 KRT3P12035 628 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 SPDYE2Q495Y8 402 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 DDX50Q9BQ39 737 aaKnown RBP9.3□□□□□ -0.92
PTPN3-204ENST00000446349 MID2Q9UJV3 735 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 ARL4AP40617 200 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 UBXN2AP68543 259 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 SYNE4Q8N205 404 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 MYO1AQ9UBC5 1043 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 SEL1LQ9UBV2 794 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 USP31Q70CQ4 1352 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 KIAA1210Q9ULL0 1709 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 MYO1FO00160 1098 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 HMGB3O15347 200 aaKnown RBP9.3□□□□□ -0.92
PTPN3-204ENST00000446349 H2AFZP0C0S5 128 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 IFNAR1P17181 557 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 H2AFVQ71UI9 128 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 FAM20AQ96MK3 541 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 FCER1AP12319 257 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 HVCN1Q96D96 273 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 POLR3EQ9NVU0 708 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 TTLL3Q9Y4R7 772 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 ZNF445P59923 1031 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 IGBP1P78318 339 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 LRRC63Q05C16 580 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 WHAMMP3Q1A5X7 153 aa9.3□□□□□ -0.92
PTPN3-204ENST00000446349 NSUN6Q8TEA1 469 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms