RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 SEPT6Q14141 434 aa18.72■□□□□ 0.59
PTPRF-209ENST00000438120 RBBP5Q15291 538 aaKnown RBP18.72■□□□□ 0.59
PTPRF-209ENST00000438120 MTERF2Q49AM1 385 aa18.72■□□□□ 0.59
PTPRF-209ENST00000438120 CC2D2BQ6DHV5 1058 aa18.72■□□□□ 0.59
PTPRF-209ENST00000438120 SMAP1Q8IYB5 467 aaPredicted RBP18.72■□□□□ 0.59
PTPRF-209ENST00000438120 STAT2P52630 851 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 DYNLT1P63172 113 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 RINT1Q6NUQ1 792 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 ZNF653Q96CK0 615 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 PPP1R13BQ96KQ4 1090 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 KANSL2Q9H9L4 492 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 HOMER3Q9NSC5 361 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 RNF123Q5XPI4 1314 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 A0A1W2PQ27 194 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 A0A1W2PQ64 194 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 A0A1W2PQD8 194 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 ARPP19P56211 112 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 MECOMQ03112 1051 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 ANKRD36BP1Q96IX9 119 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 VCXQ9H320 206 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 FAM114A2Q9NRY5 505 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 NXF1Q9UBU9 619 aaKnown RBP18.71■□□□□ 0.59
PTPRF-209ENST00000438120 LARGE1O95461 756 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 AFPP02771 609 aaKnown RBP18.71■□□□□ 0.59
PTPRF-209ENST00000438120 CXCR5P32302 372 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 C7orf31Q8N865 590 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 FAM133AQ8N9E0 248 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 MMP1P03956 469 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 MCUQ8NE86 351 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 MAN1B1Q9UKM7 699 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 SH2B2O14492 632 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-209ENST00000438120 PTPN12Q05209 780 aaKnown RBP18.71■□□□□ 0.59
PTPRF-209ENST00000438120 SLFNL1Q499Z3 407 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 MIS18BP1Q6P0N0 1132 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 ABI1Q8IZP0 508 aa18.71■□□□□ 0.59
PTPRF-209ENST00000438120 RNF10Q8N5U6 811 aaKnown RBP18.71■□□□□ 0.59
PTPRF-209ENST00000438120 ATP10DQ9P241 1426 aa18.71■□□□□ 0.58
PTPRF-209ENST00000438120 RSRC2Q7L4I2 434 aaKnown RBP18.7■□□□□ 0.58
PTPRF-209ENST00000438120 CCDC68Q9H2F9 335 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 EFCAB8A8MWE9 144 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 PCDHB6Q9Y5E3 794 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 LAD1O00515 517 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 GFPT2O94808 682 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 ECE1P42892 770 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 PIGBQ92521 554 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 MAGOHBQ96A72 148 aaKnown RBP18.7■□□□□ 0.58
PTPRF-209ENST00000438120 UNC13AQ9UPW8 1703 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 A0A1B0GUA9 196 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 BAG2O95816 211 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 SYDE2Q5VT97 1194 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 CEP120Q8N960 986 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 FAM71BQ8TC56 605 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 NLRP7Q8WX94 980 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 ACCSQ96QU6 501 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.7■□□□□ 0.58
PTPRF-209ENST00000438120 MAPK4P31152 587 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 DDIT3P35638 169 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 KIF11P52732 1056 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 CACNB3P54284 484 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 SUSD4Q5VX71 490 aa18.7■□□□□ 0.58
PTPRF-209ENST00000438120 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.7■□□□□ 0.58
PTPRF-209ENST00000438120 PASKQ96RG2 1323 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 GOLGA8KD6RF30 607 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 NKX1-1Q15270 411 aaPredicted RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 SAMSN1Q9NSI8 373 aaKnown RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 POLR3EQ9NVU0 708 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 RASGRF1Q13972 1273 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 BBOX1O75936 387 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 CD58P19256 250 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 LMNB1P20700 586 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 OSBPP22059 807 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 TYW1Q9NV66 732 aaKnown RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 CAPN7Q9Y6W3 813 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 MARK3P27448 753 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 IFNAR2P48551 515 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 USP14P54578 494 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 GABPB1Q06547 395 aaPredicted RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 CCNYQ8ND76 341 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 CAPS2Q9BXY5 557 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 MIS12Q9H081 205 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 FNDC3AQ9Y2H6 1198 aaKnown RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 KIF21AQ7Z4S6 1674 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 SEC31AO94979 1220 aaKnown RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 SESN3P58005 492 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 CACYBPQ9HB71 228 aaKnown RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 BZW2Q9Y6E2 419 aaKnown RBP18.69■□□□□ 0.58
PTPRF-209ENST00000438120 WDR17Q8IZU2 1322 aa18.69■□□□□ 0.58
PTPRF-209ENST00000438120 TRAPPC10P48553 1259 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 AP5M1Q9H0R1 490 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 UBE2TQ9NPD8 197 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 FTCDO95954 541 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 CCNA1P78396 465 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 ACRBPQ8NEB7 543 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 PDE11AQ9HCR9 933 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 CCND2P30279 289 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 CTTNQ14247 550 aaKnown RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 ZSCAN26Q16670 478 aa18.68■□□□□ 0.58
PTPRF-209ENST00000438120 ZNF658Q5TYW1 1059 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 NOP9Q86U38 636 aaKnown RBP18.68■□□□□ 0.58
PTPRF-209ENST00000438120 HDAC11Q96DB2 347 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms