RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 KCNQ3O43525 872 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 COG7P83436 770 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF274Q96GC6 653 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 KRT10P13645 584 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 EXOC8Q8IYI6 725 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.11□□□□□ -0.311e-14■■■■■ 125.5
CCDC88A-207ENST00000436346 POLIQ9UNA4 740 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 ANGPTL3Q9Y5C1 460 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 ORC6Q9Y5N6 252 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 GARSP41250 739 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 POLR2FP61218 127 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 RAB44Q7Z6P3 723 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 VCX3AQ9NNX9 186 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 OGFRQ9NZT2 677 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 BFSP1Q12934 665 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 MICAL1Q8TDZ2 1067 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 DLG5Q8TDM6 1919 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 WDR64B1ANS9 1081 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 EIF3CLB5ME19 914 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 STK25O00506 426 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 NR2F2P24468 414 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 INPP5BP32019 993 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 LRRC43Q8N309 656 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 RNF10Q8N5U6 811 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 EIF3CQ99613 913 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 LAD1O00515 517 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 MCF2LO15068 1137 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 COBLO75128 1261 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 KRT33BQ14525 404 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 BCAP29Q9UHQ4 241 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 NPR1P16066 1061 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 YWHAGP61981 247 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 BCORL1Q5H9F3 1711 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 SYDE2Q5VT97 1194 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 ZBTB33Q86T24 672 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 SIX6OS1Q8N1H7 587 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 SPDL1Q96EA4 605 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 LEMD3Q9Y2U8 911 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 A6NNZ2 444 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 TUBB8Q3ZCM7 444 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 MYLK4Q86YV6 388 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 ELMOD1Q8N336 334 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 CLCN1P35523 988 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 POTEDQ86YR6 584 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 NRKQ7Z2Y5 1582 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 MYL3P08590 195 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 SLC16A2P36021 539 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 OSTNP61366 133 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 IQCB1Q15051 598 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 NLRP4Q96MN2 994 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 KIAA1468Q9P260 1216 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 NPC1L1Q9UHC9 1359 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 ZBED2Q9BTP6 218 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 PCDHA4Q9UN74 947 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 PPFIA4O75335 1185 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 SRGAP2CP0DJJ0 459 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 U2AF2P26368 475 aaKnown RBP eCLIP13.1□□□□□ -0.315e-7■■■■□ 23.2
CCDC88A-207ENST00000436346 LONP1P36776 959 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 PTH1RQ03431 593 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 DBN1Q16643 649 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 MAP3K21Q5TCX8 1036 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 ADALQ6DHV7 355 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 LARP4BQ92615 738 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 DDX27Q96GQ7 796 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 AKAP12Q02952 1782 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 MYSM1Q5VVJ2 828 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 ARHGEF18Q6ZSZ5 1173 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 PSPC1Q8WXF1 523 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 INSRP06213 1382 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 VIRMAQ69YN4 1812 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF233A6NK53 670 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 MED7O43513 233 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 PTK2Q05397 1052 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 TMC4Q7Z404 712 aa13.1□□□□□ -0.31
CCDC88A-207ENST00000436346 MFAP3P55082 362 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 SCARA5Q6ZMJ2 495 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 CDKL2Q92772 493 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 DACT3Q96B18 629 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 CARD6Q9BX69 1037 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ABCF3Q9NUQ8 709 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 SLC8A2Q9UPR5 921 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 PLEKHG1Q9ULL1 1385 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 LTKP29376 864 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 NDUFA8P51970 172 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 CC2D2BQ6DHV5 1058 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 PDZD8Q8NEN9 1154 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 JPH2Q9BR39 696 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ATF5Q9Y2D1 282 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 MAGI3Q5TCQ9 1506 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 GTPBP6O43824 516 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 PSAPP07602 524 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ACTN1P12814 892 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 HOXA13P31271 388 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 PNMA8AQ86V59 439 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 HAUS8Q9BT25 410 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 SERPINB13Q9UIV8 391 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 CIAO1O76071 339 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms