RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 LINC00116Q8NCU8 138 aa8.34□□□□□ -1.07
SMARCC1-202ENST00000425518 SNX29Q8TEQ0 813 aa8.34□□□□□ -1.07
SMARCC1-202ENST00000425518 ANKS1AQ92625 1134 aa8.34□□□□□ -1.07
SMARCC1-202ENST00000425518 ARL8AQ96BM9 186 aa8.34□□□□□ -1.07
SMARCC1-202ENST00000425518 RBM12Q9NTZ6 932 aaKnown RBP8.34□□□□□ -1.07
SMARCC1-202ENST00000425518 HSF2BPO75031 334 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 FGFR1OPO95684 399 aaKnown RBP8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PPP1R2P41236 205 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 CDK8P49336 464 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 ATP1A2P50993 1020 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 APBA1Q02410 837 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PACS2Q86VP3 889 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 MTMR8Q96EF0 704 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 NOX5Q96PH1 765 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 LZTS2Q9BRK4 669 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 BLOC1S4Q9NUP1 217 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 STIM2Q9P246 746 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 SAMM50Q9Y512 469 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 BCORQ6W2J9 1755 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 USP17L5A8MUK1 530 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 EBAG9O00559 213 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 OPA1O60313 960 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 FTCDO95954 541 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 TNNI2P48788 182 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 GUCY2FP51841 1108 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 TMEM266Q2M3C6 531 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 KRT79Q5XKE5 535 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 UNC13DQ70J99 1090 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 NELFCDQ8IXH7 590 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 SH2D3CQ8N5H7 860 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 DOCK2Q92608 1830 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 DDX12PQ92771 950 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PNMA5Q96PV4 448 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 TSG101Q99816 390 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 ZHX3Q9H4I2 956 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 ZSCAN5CA6NGD5 496 aaPredicted RBP8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 SLC37A4O43826 429 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 ZEB2O60315 1214 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 LIG3P49916 1009 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PPFIA1Q13136 1202 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PTPROQ16827 1216 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 HAUS3Q68CZ6 603 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 TPTE2Q6XPS3 522 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 WDR66Q8TBY9 1149 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PPM1EQ8WY54 764 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 CEP95Q96GE4 821 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 TLR10Q9BXR5 811 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 NFU1Q9UMS0 254 aa8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 PACSIN2Q9UNF0 486 aaPredicted RBP8.33□□□□□ -1.08
SMARCC1-202ENST00000425518 POLR2FP61218 127 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CACNB1Q02641 598 aaPredicted RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 GUCY2DQ02846 1103 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 SEMA3FQ13275 785 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 KCNK18Q7Z418 384 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 TEX11Q8IYF3 940 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 EPB41L5Q9HCM4 733 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 GPCPD1Q9NPB8 672 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CACNA1SQ13698 1873 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 SHTN1A0MZ66 631 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 HNRNPH3P31942 346 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CARSP49589 748 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 EHHADHQ08426 723 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 KCTD19Q17RG1 926 aaPredicted RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CFAP221Q4G0U5 840 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 SLC10A5Q5PT55 438 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 PDXDC1Q6P996 788 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 GUF1Q8N442 669 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 TBC1D5Q92609 795 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 LSM14BQ9BX40 385 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 SPZ1Q9BXG8 430 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 ZNF287Q9HBT7 754 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 ITGB4P16144 1822 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 RAD21O60216 631 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 PALMO75781 387 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 KRT14P02533 472 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 LDHCP07864 332 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 GLI1P08151 1106 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 BTDP43251 543 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 EPHB4P54760 987 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 GSTO1P78417 241 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 PDCLQ13371 301 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 RAPGEF1Q13905 1077 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 SLC9C1Q4G0N8 1177 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CFAP58Q5T655 872 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 KLHDC7AQ5VTJ3 777 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 LRRC47Q8N1G4 583 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 BAP1Q92560 729 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CCDC43Q96MW1 224 aaKnown RBP8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 KRT12Q99456 494 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 CENPHQ9H3R5 247 aa8.32□□□□□ -1.08
SMARCC1-202ENST00000425518 PVALEFA0A1B0GWK0 134 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 GOLGA8KD6RF30 607 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 PRLRP16471 622 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 KCNMA1Q12791 1236 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 UBE2SQ16763 222 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 SFMBT2Q5VUG0 894 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 CERS3Q8IU89 383 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 MYOCDQ8IZQ8 938 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 RAD54LQ92698 747 aa8.31□□□□□ -1.08
SMARCC1-202ENST00000425518 RAB34Q9BZG1 259 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms