RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 WDR11Q9BZH6 1224 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MTIF3Q9H2K0 278 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 CUEDC2Q9H467 287 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 RPF1Q9H9Y2 349 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 KMT5AQ9NQR1 393 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 LCMT1Q9UIC8 334 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 STK38LQ9Y2H1 464 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MAP3K15Q6ZN16 1313 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF263O14978 683 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 SLC4A1P02730 911 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 IL9RQ01113 521 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 GRIN1Q05586 938 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 DALRD3Q5D0E6 543 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 EPAS1Q99814 870 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 DSCC1Q9BVC3 393 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 FAM207AQ9NSI2 230 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MOSPD1Q9UJG1 213 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 PCDHB8Q9UN66 801 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 LEMD3Q9Y2U8 911 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TRAPPC8Q9Y2L5 1435 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 DEUP1Q05D60 604 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 RC3H1Q5TC82 1133 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 RNF207Q6ZRF8 634 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TBC1D19Q8N5T2 526 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 SERPINI1Q99574 410 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 DDX50Q9BQ39 737 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 AMNQ9BXJ7 453 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 SELENONQ9NZV5 590 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 RIPOR2Q9Y4F9 1068 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 SLC4A7Q9Y6M7 1214 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ABCA5Q8WWZ7 1642 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 XDHP47989 1333 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 KCNJ18B7U540 433 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 GOLGA8KD6RF30 607 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ATXN8OSP0DMR3 200 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TAC1P20366 129 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ARPP19P56211 112 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 EIF2B5Q13144 721 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 KCNJ12Q14500 433 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 C10orf76Q5T2E6 689 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ANGPTL8Q6UXH0 198 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TTC30BQ8N4P2 665 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TCP11Q8WWU5 503 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ACCSQ96QU6 501 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 NR1H4Q96RI1 486 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TUBB6Q9BUF5 446 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MAGEB5Q9BZ81 275 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MYO10Q9HD67 2058 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 YWHAGP61981 247 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ART3Q13508 389 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ALCAMQ13740 583 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 TRIM62Q9BVG3 475 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 UGGT2Q9NYU1 1516 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ESRRBO95718 433 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ACTN1P12814 892 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 MORC3Q14149 939 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 SZRD1Q7Z422 152 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 KIAA0825Q8IV33 1275 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 TSSK1BQ9BXA7 367 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 VPS54Q9P1Q0 977 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 SFMBT1Q9UHJ3 866 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 KCNH4Q9UQ05 1017 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 CSPG5O95196 566 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 PSAPP07602 524 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ANKRD42Q8N9B4 389 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 FAM149B1Q96BN6 582 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 SUGT1Q9Y2Z0 365 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 HGSO14964 777 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 SORBS3O60504 671 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF189O75820 626 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 PSMC2P35998 433 aaKnown RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 DSTYKQ6XUX3 929 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 MCUQ8NE86 351 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 PHKBQ93100 1093 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 GSDMAQ96QA5 445 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ARHGEF12Q9NZN5 1544 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 KLRF2D3W0D1 207 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 LONP1P36776 959 aaKnown RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 EXOC3L4Q17RC7 722 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 BANK1Q8NDB2 785 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 MTBPQ96DY7 904 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 LBHD1Q9BQE6 289 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 TAB2Q9NYJ8 693 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 COL17A1Q9UMD9 1497 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 DISP3Q9P2K9 1392 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 DENND3A2RUS2 1198 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 CCDC151A5D8V7 595 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 H3BRJ5 948 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 TSPY1Q01534 308 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 TRIM59Q8IWR1 403 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF654Q8IZM8 581 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 OR8K1Q8NGG5 319 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 COG4Q9H9E3 785 aa7.42□□□□□ -1.22
SCN1A-204ENST00000423058 STX18Q9P2W9 335 aaKnown RBP7.42□□□□□ -1.22
SCN1A-204ENST00000423058 PRPSAP2O60256 369 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 EEF1GP26641 437 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SLFN13Q68D06 897 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 DEPDC1BQ8WUY9 529 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 TEKT4Q8WW24 435 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 AK8Q96MA6 479 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms