RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CCDC51Q96ER9 411 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 IWS1Q96ST2 819 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 RIT2Q99578 217 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 NUP58Q9BVL2 599 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 PCDHAC2Q9Y5I4 1007 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 CXCL11O14625 94 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 PTGER2P43116 358 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 CCNA1P78396 465 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 C9orf131Q5VYM1 1079 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 RNF207Q6ZRF8 634 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 IGSF22Q8N9C0 903 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 RDM1Q8NG50 284 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 GOLGA5Q8TBA6 731 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 ZNF577Q9BSK1 485 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 THAP9Q9H5L6 903 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 CTNND2Q9UQB3 1225 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 COL4A3BPQ9Y5P4 624 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 SFNP31947 248 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 MTIF2P46199 727 aaKnown RBP9.36□□□□□ -0.91
USP54-203ENST00000418501 PPP2R3AQ06190 1150 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 MTMR2Q13614 643 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 ALCAMQ13740 583 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 NSMFQ6X4W1 530 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 PPP4R3CPQ6ZMV5 832 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 MIER3Q7Z3K6 550 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 SH3RF1Q7Z6J0 888 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 C12orf42Q96LP6 360 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 SGIP1Q9BQI5 828 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 TIPINQ9BVW5 301 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 TEX13BQ9BXU2 312 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 SAMM50Q9Y512 469 aa9.36□□□□□ -0.91
USP54-203ENST00000418501 CALUO43852 315 aaPredicted RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 SARSP49591 514 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 CLK2P49760 499 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 CEP55Q53EZ4 464 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 TYW1BQ6NUM6 668 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 OTUD6AQ7L8S5 288 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 GIMAP8Q8ND71 665 aaPredicted RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 MTMR9Q96QG7 549 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 NAA15Q9BXJ9 866 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 ACAD9Q9H845 621 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 ZNF112Q9UJU3 913 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 H0YCG3 227 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 RRP9O43818 475 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 RHOBTB3O94955 611 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 TDP2O95551 362 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 ECE1P42892 770 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 PRELPP51888 382 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 PLS1Q14651 629 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 CCDC186Q7Z3E2 898 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 CNGA4Q8IV77 575 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 NSUN6Q8TEA1 469 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 POLR3CQ9BUI4 534 aaPredicted RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 ARHGEF35A5YM69 484 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 CCNE1P24864 410 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 LRRC63Q05C16 580 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 ERO1BQ86YB8 467 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 DHX40Q8IX18 779 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 C4orf32Q8N8J7 132 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 TRERF1Q96PN7 1200 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 KRT76Q01546 638 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 EPHA7Q15375 998 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 EARS2Q5JPH6 523 aaKnown RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 NBPF12Q5TAG4 269 aaPredicted RBP9.35□□□□□ -0.91
USP54-203ENST00000418501 USP37Q86T82 979 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 GPBP1Q86WP2 473 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 EXOC8Q8IYI6 725 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 MYOCDQ8IZQ8 938 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 TMEM60Q9H2L4 133 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 KBTBD4Q9NVX7 518 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 SEL1LQ9UBV2 794 aa9.35□□□□□ -0.91
USP54-203ENST00000418501 PFASO15067 1338 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 SLC25A27O95847 323 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 PPATQ06203 517 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 PROCA1Q8NCQ7 364 aaPredicted RBP9.34□□□□□ -0.91
USP54-203ENST00000418501 BLZF1Q9H2G9 400 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 RNF146Q9NTX7 359 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 ZNF541Q9H0D2 1346 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 CCDC40Q4G0X9 1142 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 PDXDC2PQ6P474 469 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 HS2ST1Q7LGA3 356 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 CSGALNACT2Q8N6G5 542 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 P2RX5Q93086 422 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 PANK4Q9NVE7 773 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 KIAA1024Q9UPX6 916 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 DDX60LQ5H9U9 1706 aaKnown RBP9.34□□□□□ -0.91
USP54-203ENST00000418501 MYH6P13533 1939 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 PLA2G4BP0C869 781 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 BCRP11274 1271 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 PTPRAP18433 802 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 VCAM1P19320 739 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 SCP2P22307 547 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 MDM2Q00987 491 aaPredicted RBP9.34□□□□□ -0.91
USP54-203ENST00000418501 KMT5BQ4FZB7 885 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 FAM26FQ5R3K3 315 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 FOXR2Q6PJQ5 311 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 GADL1Q6ZQY3 521 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 ATP6V0A1Q93050 837 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 SYT17Q9BSW7 474 aa9.34□□□□□ -0.91
USP54-203ENST00000418501 SLC5A4Q9NY91 659 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms