RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ARHGEF15O94989 841 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 NR3C2P08235 984 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 IQCF3P0C7M6 154 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 ATP2A2P16615 1042 aaKnown RBP13.47□□□□□ -0.25
USP4-204ENST00000416417 CHMLP26374 656 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 PTGISQ16647 500 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 STOX1Q6ZVD7 989 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 MICALL1Q8N3F8 863 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 GPKOWQ92917 476 aaPredicted RBP eCLIP13.47□□□□□ -0.25
USP4-204ENST00000416417 CTAGE1Q96RT6 745 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 PIGSQ96S52 555 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 AMNQ9BXJ7 453 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 DDX41Q9UJV9 622 aaKnown RBP13.47□□□□□ -0.25
USP4-204ENST00000416417 CHD7Q9P2D1 2997 aa13.47□□□□□ -0.25
USP4-204ENST00000416417 SCN10AQ9Y5Y9 1956 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 PALM3A6NDB9 673 aaPredicted RBP13.46□□□□□ -0.25
USP4-204ENST00000416417 IFIT3O14879 490 aaKnown RBP13.46□□□□□ -0.25
USP4-204ENST00000416417 KPNA6O60684 536 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 ZNF286BP0CG31 522 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 HSD17B4P51659 736 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 PPP2R2DQ66LE6 453 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 TMCO2Q7Z6W1 182 aaPredicted RBP13.46□□□□□ -0.25
USP4-204ENST00000416417 RETREG2Q8NC44 543 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 DHX38Q92620 1227 aaKnown RBP13.46□□□□□ -0.25
USP4-204ENST00000416417 IWS1Q96ST2 819 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 PCDHA1Q9Y5I3 950 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 MRVI1Q9Y6F6 885 aa13.46□□□□□ -0.25
USP4-204ENST00000416417 SPTBN5Q9NRC6 3674 aaKnown RBP13.46□□□□□ -0.25
USP4-204ENST00000416417 ZBTB5O15062 677 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 RGS20O76081 388 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 CA3P07451 260 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 ZNF200P98182 395 aaPredicted RBP13.45□□□□□ -0.26
USP4-204ENST00000416417 TRDNQ13061 729 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 GRM4Q14833 912 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 TCTN1Q2MV58 587 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 SPRED2Q7Z698 418 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 FCHSD1Q86WN1 690 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 MTMR8Q96EF0 704 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 PDCD2LQ9BRP1 358 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 BCAS3Q9H6U6 928 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 HDAC6Q9UBN7 1215 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 PCDHA11Q9Y5I1 949 aa13.45□□□□□ -0.26
USP4-204ENST00000416417 E7EWF7 191 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 CYTH3O43739 400 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 EIF3JO75822 258 aaKnown RBP13.44□□□□□ -0.26
USP4-204ENST00000416417 PSEN2P49810 448 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 NT5C2P49902 561 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 ANTXR2P58335 489 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 SP2Q02086 613 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 PTPN11Q06124 597 aaPredicted RBP13.44□□□□□ -0.26
USP4-204ENST00000416417 COL9A3Q14050 684 aaPredicted RBP13.44□□□□□ -0.26
USP4-204ENST00000416417 GPNMBQ14956 572 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 DHX37Q8IY37 1157 aaKnown RBP13.44□□□□□ -0.26
USP4-204ENST00000416417 WNT8BQ93098 351 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 MYL10Q9BUA6 226 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 EPOPA6NHQ4 379 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 CASTP20810 708 aaKnown RBP13.44□□□□□ -0.26
USP4-204ENST00000416417 BFSP2Q13515 415 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 HIC1Q14526 733 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 MFSD10Q14728 455 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 WTAPQ15007 396 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 PGM5Q15124 567 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 DGKDQ16760 1214 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 TMEM67Q5HYA8 995 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 KRT40Q6A162 431 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 RUFY2Q8WXA3 655 aa13.44□□□□□ -0.26
USP4-204ENST00000416417 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
USP4-204ENST00000416417 REV3LO60673 3130 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 MYH6P13533 1939 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 SGSM2O43147 1006 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 GGPS1O95749 300 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 PFKMP08237 780 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 ACTN1P12814 892 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 KIAA0753Q2KHM9 967 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 HSDL1Q3SXM5 330 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 RALYLQ86SE5 291 aaKnown RBP13.43□□□□□ -0.26
USP4-204ENST00000416417 SKAP1Q86WV1 359 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 C7orf31Q8N865 590 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 RIOX1Q9H6W3 641 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 TELO2Q9Y4R8 837 aa13.43□□□□□ -0.26
USP4-204ENST00000416417 ERICH2A1L162 156 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 GCOM1H8Y6P7 765 aaPredicted RBP13.42□□□□□ -0.26
USP4-204ENST00000416417 POLR2MP0CAP2 368 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 RFC2P35250 354 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 TROAPQ12815 778 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 LAMC2Q13753 1193 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 TJAP1Q5JTD0 557 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 LRRC8DQ7L1W4 858 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 VSIG10LQ86VR7 867 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 RAB11FIP4Q86YS3 637 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 HERC6Q8IVU3 1022 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 NCOA7Q8NI08 942 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 PPTC7Q8NI37 304 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 SPATA33Q96N06 139 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 GTF2IRD1Q9UHL9 959 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 RBM8AQ9Y5S9 174 aaKnown RBP13.42□□□□□ -0.26
USP4-204ENST00000416417 KIAA1217Q5T5P2 1943 aa13.42□□□□□ -0.26
USP4-204ENST00000416417 TANC1Q9C0D5 1861 aa13.41□□□□□ -0.26
USP4-204ENST00000416417 LCHNA4D1U4 455 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms