RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PROCA1Q8NCQ7 364 aaPredicted RBP16.67■□□□□ 0.26
USP4-203ENST00000415188 TMEM47Q9BQJ4 181 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 TRIM34Q9BYJ4 488 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 INTS13Q9NVM9 706 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 BARHL2Q9NY43 387 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 hCG_1984214I3L0E3 225 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 MYL1P05976 194 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 HLA-DOAP06340 250 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 PRPHP41219 470 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 NOVP48745 357 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 PDXDC2PQ6P474 469 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 ZNF713Q8N859 430 aaPredicted RBP16.67■□□□□ 0.26
USP4-203ENST00000415188 AS3MTQ9HBK9 375 aa16.67■□□□□ 0.26
USP4-203ENST00000415188 TRMT1Q9NXH9 659 aaKnown RBP16.67■□□□□ 0.26
USP4-203ENST00000415188 LOC285556D6RIA3 1793 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 TMEM232C9JQI7 657 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 STXBP3O00186 592 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 STX10O60499 249 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 GRK4P32298 578 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 MCM7P33993 719 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 AFMP43652 599 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 CDK8P49336 464 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 SPAG1Q07617 926 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 MTMR2Q13614 643 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 NR1I3Q14994 352 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 FILIP1LQ4L180 1135 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 CDKAL1Q5VV42 579 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 KRT25Q7Z3Z0 450 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 WDR18Q9BV38 432 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 GTPBP4Q9BZE4 634 aaKnown RBP16.66■□□□□ 0.26
USP4-203ENST00000415188 MAGEF1Q9HAY2 307 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 PNMA3Q9UL41 463 aa16.66■□□□□ 0.26
USP4-203ENST00000415188 PHLPP2Q6ZVD8 1323 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 MYH8P13535 1937 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 ASNSP08243 561 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 SH3D19Q5HYK7 790 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 WWC2Q6AWC2 1192 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 STAG2Q8N3U4 1231 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 ZNF592Q92610 1267 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 CCDC94Q9BW85 323 aaPredicted RBP16.65■□□□□ 0.26
USP4-203ENST00000415188 ASCC2Q9H1I8 757 aaPredicted RBP16.65■□□□□ 0.26
USP4-203ENST00000415188 ZBTB21Q9ULJ3 1066 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 MGAMO43451 1857 aa16.65■□□□□ 0.26
USP4-203ENST00000415188 ESYT2A0FGR8 921 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 PPP1R3GB7ZBB8 358 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 PARP1P09874 1014 aaKnown RBP16.64■□□□□ 0.25
USP4-203ENST00000415188 BACE1P56817 501 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 NCBP1Q09161 790 aaKnown RBP16.64■□□□□ 0.25
USP4-203ENST00000415188 DTHD1Q6ZMT9 781 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 TRMT44Q8IYL2 757 aaKnown RBP16.64■□□□□ 0.25
USP4-203ENST00000415188 PDCL2Q8N4E4 241 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 AK8Q96MA6 479 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 MED15Q96RN5 788 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 CCSER1Q9C0I3 900 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 ZMYND12Q9H0C1 365 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 CUEDC2Q9H467 287 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 L2HGDHQ9H9P8 463 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 RWDD2AQ9UIY3 292 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 PCDHA6Q9UN73 950 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 PCDHA8Q9Y5H6 950 aa16.64■□□□□ 0.25
USP4-203ENST00000415188 TNPO2O14787 897 aaKnown RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 SLU7O95391 586 aaKnown RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 GNA11P29992 359 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 FLT3LGP49771 235 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 IL17AQ16552 155 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 FAM110CQ1W6H9 321 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 HEATR3Q7Z4Q2 680 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 TMEM139Q8IV31 216 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 SLC44A5Q8NCS7 719 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 TSC1Q92574 1164 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 GPKOWQ92917 476 aaPredicted RBP eCLIP16.63■□□□□ 0.25
USP4-203ENST00000415188 PANX2Q96RD6 677 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 BAG1Q99933 345 aaPredicted RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 NAA15Q9BXJ9 866 aaKnown RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 C6orf50Q9HD87 102 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 SAMSN1Q9NSI8 373 aaKnown RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 CGNQ9P2M7 1197 aaKnown RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 BIN2Q9UBW5 565 aaPredicted RBP16.63■□□□□ 0.25
USP4-203ENST00000415188 STX8Q9UNK0 236 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 ITIH6Q6UXX5 1313 aa16.63■□□□□ 0.25
USP4-203ENST00000415188 KLRF2D3W0D1 207 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 CYTH3O43739 400 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 PEX10O60683 326 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 GH2P01242 217 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 ELNP15502 786 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 STAT6P42226 847 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 ETF1P62495 437 aaKnown RBP16.62■□□□□ 0.25
USP4-203ENST00000415188 PABPC4Q13310 644 aaKnown RBP eCLIP16.62■□□□□ 0.25
USP4-203ENST00000415188 KCNB1Q14721 858 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 ZNF658Q5TYW1 1059 aaPredicted RBP16.62■□□□□ 0.25
USP4-203ENST00000415188 ANKRD20A12PQ8NF67 263 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 CCDC51Q96ER9 411 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 RRP36Q96EU6 259 aaKnown RBP16.62■□□□□ 0.25
USP4-203ENST00000415188 DISC1Q9NRI5 854 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 TMOD4Q9NZQ9 345 aa16.62■□□□□ 0.25
USP4-203ENST00000415188 ADD3Q9UEY8 706 aaKnown RBP16.62■□□□□ 0.25
USP4-203ENST00000415188 USP17L10C9JJH3 530 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 ADCY3O60266 1144 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 SLC34A2O95436 690 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 CCL5P13501 91 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms