RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 GINM1Q9NU53 330 aa19.52■□□□□ 0.72
PTPRC-206ENST00000413409 CXXC1Q9P0U4 656 aaPredicted RBP19.52■□□□□ 0.72
PTPRC-206ENST00000413409 HCN4Q9Y3Q4 1203 aa19.52■□□□□ 0.72
PTPRC-206ENST00000413409 PKN1Q16512 942 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 SASS6Q6UVJ0 657 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 FOXP4Q8IVH2 680 aaPredicted RBP19.51■□□□□ 0.71
PTPRC-206ENST00000413409 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.51■□□□□ 0.71
PTPRC-206ENST00000413409 SMCHD1A6NHR9 2005 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 SPDYE16A6NNV3 312 aaPredicted RBP19.51■□□□□ 0.71
PTPRC-206ENST00000413409 NMT2O60551 498 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 RASA1P20936 1047 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 GNAQP50148 359 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 KCNQ1P51787 676 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 GRM4Q14833 912 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 TMEM240Q5SV17 173 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 CKAP2LQ8IYA6 745 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 DYNLL2Q96FJ2 89 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 PHF20Q9BVI0 1012 aa19.51■□□□□ 0.71
PTPRC-206ENST00000413409 A0A1W2PQ45 241 aaPredicted RBP19.5■□□□□ 0.71
PTPRC-206ENST00000413409 A0A1W2PQY0 241 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 BTBD18B2RXH4 712 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 CUTAO60888 179 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 GH2P01242 217 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 TSPY3P0CV98 308 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 TSPY8P0CW00 308 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 VCAM1P19320 739 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 ALYREFQ86V81 257 aaKnown RBP19.5■□□□□ 0.71
PTPRC-206ENST00000413409 ZNF444Q8N0Y2 327 aaPredicted RBP19.5■□□□□ 0.71
PTPRC-206ENST00000413409 FAM177A1Q8N128 213 aaPredicted RBP19.5■□□□□ 0.71
PTPRC-206ENST00000413409 SLC44A5Q8NCS7 719 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 MOV10L1Q9BXT6 1211 aaKnown RBP19.5■□□□□ 0.71
PTPRC-206ENST00000413409 BRMS1Q9HCU9 246 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 IL17RBQ9NRM6 502 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 KCNJ14Q9UNX9 436 aa19.5■□□□□ 0.71
PTPRC-206ENST00000413409 PGK1P00558 417 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 TIMP1P01033 207 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 KRT2P35908 639 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 PLCD1P51178 756 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 STX1AQ16623 288 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 ANKRD33Q7Z3H0 272 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 CMTR1Q8N1G2 835 aaKnown RBP19.49■□□□□ 0.71
PTPRC-206ENST00000413409 SRBD1Q8N5C6 995 aaKnown RBP19.49■□□□□ 0.71
PTPRC-206ENST00000413409 PNMA1Q8ND90 353 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 NEDD1Q8NHV4 660 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 ACER1Q8TDN7 264 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 TIGD1Q96MW7 591 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 C11orf16Q9NQ32 467 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 XPNPEP3Q9NQH7 507 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 SAP30BPQ9UHR5 308 aaKnown RBP19.49■□□□□ 0.71
PTPRC-206ENST00000413409 CEP131Q9UPN4 1083 aa19.49■□□□□ 0.71
PTPRC-206ENST00000413409 TRANK1O15050 2925 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 ESPNB1AK53 854 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 NOVP48745 357 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 CDK8P49336 464 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 NDUFA8P51970 172 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 ANO6Q4KMQ2 910 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 CCDC82Q8N4S0 544 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 TOX2Q96NM4 488 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 CCDC39Q9UFE4 941 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 HPSEQ9Y251 543 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 ZNF236Q9UL36 1845 aa19.48■□□□□ 0.71
PTPRC-206ENST00000413409 STRNO43815 780 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 BMP15O95972 392 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 SCG2P13521 617 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 PFKFB1P16118 471 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 PFKFB3Q16875 520 aaPredicted RBP19.47■□□□□ 0.71
PTPRC-206ENST00000413409 TMEM31Q5JXX7 168 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 RESP18Q5W5W9 173 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 MFSD5Q6N075 450 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 POTEDQ86YR6 584 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 KHSRPQ92945 711 aaKnown RBP eCLIP19.47■□□□□ 0.71
PTPRC-206ENST00000413409 FEZ1Q99689 392 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 LZTS2Q9BRK4 669 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 KIAA1683Q9H0B3 1180 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 NKX2-4Q9H2Z4 354 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 VPS54Q9P1Q0 977 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 TBX21Q9UL17 535 aa19.47■□□□□ 0.71
PTPRC-206ENST00000413409 V9GY48 417 aaPredicted RBP19.47■□□□□ 0.71
PTPRC-206ENST00000413409 A0A1B0GVL5 298 aa19.46■□□□□ 0.71
PTPRC-206ENST00000413409 ERCC3P19447 782 aa19.46■□□□□ 0.71
PTPRC-206ENST00000413409 TOB1P50616 345 aaPredicted RBP19.46■□□□□ 0.71
PTPRC-206ENST00000413409 KRI1Q8N9T8 703 aaKnown RBP19.46■□□□□ 0.71
PTPRC-206ENST00000413409 MAML3Q96JK9 1138 aa19.46■□□□□ 0.71
PTPRC-206ENST00000413409 TRIM34Q9BYJ4 488 aa19.46■□□□□ 0.71
PTPRC-206ENST00000413409 RPAP3Q9H6T3 665 aaPredicted RBP19.46■□□□□ 0.71
PTPRC-206ENST00000413409 SH3GLB2Q9NR46 395 aa19.46■□□□□ 0.71
PTPRC-206ENST00000413409 USP25Q9UHP3 1055 aa19.46■□□□□ 0.71
PTPRC-206ENST00000413409 YBX2Q9Y2T7 364 aaKnown RBP19.46■□□□□ 0.71
PTPRC-206ENST00000413409 MYH8P13535 1937 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 GREB1LQ9C091 1923 aaPredicted RBP19.45■□□□□ 0.7
PTPRC-206ENST00000413409 ACRP10323 421 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 TAL1P17542 331 aaPredicted RBP19.45■□□□□ 0.7
PTPRC-206ENST00000413409 GABPAQ06546 454 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 ZNF365Q70YC5 407 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 ZSCAN30Q86W11 494 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 TNFRSF25Q93038 417 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 LENG1Q96BZ8 264 aaPredicted RBP19.45■□□□□ 0.7
PTPRC-206ENST00000413409 CBX8Q9HC52 389 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 ANO10Q9NW15 660 aa19.45■□□□□ 0.7
PTPRC-206ENST00000413409 NOL7Q9UMY1 257 aaKnown RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms