RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 NAPBQ9H115 298 aa21.3■■□□□ 1
UFD1-202ENST00000399523 GTF2IRD1Q9UHL9 959 aa21.3■■□□□ 1
UFD1-202ENST00000399523 PNMA2Q9UL42 364 aa21.3■■□□□ 1
UFD1-202ENST00000399523 B4DLN1 442 aa21.29■■□□□ 1
UFD1-202ENST00000399523 MRPL12P52815 198 aaKnown RBP21.29■■□□□ 1
UFD1-202ENST00000399523 HTRA4P83105 476 aaPredicted RBP21.29■■□□□ 1
UFD1-202ENST00000399523 MKRN4PQ13434 485 aaPredicted RBP21.29■■□□□ 1
UFD1-202ENST00000399523 PTPROQ16827 1216 aa21.29■■□□□ 1
UFD1-202ENST00000399523 HFE2Q6ZVN8 426 aa21.29■■□□□ 1
UFD1-202ENST00000399523 SP7Q8TDD2 431 aaPredicted RBP21.29■■□□□ 1
UFD1-202ENST00000399523 PABPC5Q96DU9 382 aaKnown RBP21.29■■□□□ 1
UFD1-202ENST00000399523 MTMR7Q9Y216 660 aa21.29■■□□□ 1
UFD1-202ENST00000399523 FAM50BQ9Y247 325 aa21.29■■□□□ 1
UFD1-202ENST00000399523 MBTPS1Q14703 1052 aa21.28■■□□□ 1
UFD1-202ENST00000399523 TRIM71Q2Q1W2 868 aaKnown RBP21.28■■□□□ 1
UFD1-202ENST00000399523 TIGD5Q53EQ6 642 aa21.28■■□□□ 1
UFD1-202ENST00000399523 SEC62Q99442 399 aaKnown RBP21.28■■□□□ 1
UFD1-202ENST00000399523 INCENPQ9NQS7 918 aa21.28■■□□□ 1
UFD1-202ENST00000399523 TECTAO75443 2155 aa21.28■■□□□ 1
UFD1-202ENST00000399523 USP34Q70CQ2 3546 aa21.27■■□□□ 1
UFD1-202ENST00000399523 CASTP20810 708 aaKnown RBP21.27■■□□□ 1
UFD1-202ENST00000399523 ARHGAP1Q07960 439 aa21.27■■□□□ 1
UFD1-202ENST00000399523 PTK7Q13308 1070 aa21.27■■□□□ 1
UFD1-202ENST00000399523 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.27■■□□□ 1
UFD1-202ENST00000399523 ADHFE1Q8IWW8 467 aa21.27■■□□□ 1
UFD1-202ENST00000399523 BANK1Q8NDB2 785 aa21.27■■□□□ 1
UFD1-202ENST00000399523 SAMD11Q96NU1 681 aa21.27■■□□□ 1
UFD1-202ENST00000399523 HDAC6Q9UBN7 1215 aa21.27■■□□□ 1
UFD1-202ENST00000399523 GH1P01241 217 aa21.26■□□□□ 0.99
UFD1-202ENST00000399523 EPC2Q52LR7 807 aa21.26■□□□□ 0.99
UFD1-202ENST00000399523 ZNF618Q5T7W0 954 aa21.26■□□□□ 0.99
UFD1-202ENST00000399523 MFSD14AQ96MC6 490 aa21.26■□□□□ 0.99
UFD1-202ENST00000399523 UPF3BQ9BZI7 483 aaKnown RBP21.26■□□□□ 0.99
UFD1-202ENST00000399523 WDR19Q8NEZ3 1342 aa21.26■□□□□ 0.99
UFD1-202ENST00000399523 H3BNC9 293 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 LGR5O75473 907 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 TCEAL5Q5H9L2 206 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 C7orf31Q8N865 590 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 RGS22Q8NE09 1264 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 ANKS1AQ92625 1134 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 GPATCH3Q96I76 525 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 CACNA1HO95180 2353 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 ZDBF2Q9HCK1 2354 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 CFAP54Q96N23 3096 aa21.25■□□□□ 0.99
UFD1-202ENST00000399523 KIAA1217Q5T5P2 1943 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 RANBP6O60518 1105 aaKnown RBP21.24■□□□□ 0.99
UFD1-202ENST00000399523 AMHP03971 560 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 IRS1P35568 1242 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 CTDSPL2Q05D32 466 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 DGKDQ16760 1214 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 LY6KQ17RY6 165 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 TSHZ3Q63HK5 1081 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 WNT8BQ93098 351 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 CHMP4BQ9H444 224 aaKnown RBP21.24■□□□□ 0.99
UFD1-202ENST00000399523 GPCPD1Q9NPB8 672 aa21.24■□□□□ 0.99
UFD1-202ENST00000399523 FRMPD2Q68DX3 1309 aaPredicted RBP21.24■□□□□ 0.99
UFD1-202ENST00000399523 RBAK-RBAKDNI3L0D1 243 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 HAS3O00219 553 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 FOXP2O15409 715 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 ORC4O43929 436 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 TOP1P11387 765 aaKnown RBP21.23■□□□□ 0.99
UFD1-202ENST00000399523 PSEN2P49810 448 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 ZMYM1Q5SVZ6 1142 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 MYOCDQ8IZQ8 938 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 DBF4BQ8NFT6 615 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 KATNAL1Q9BW62 490 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 NSUN3Q9H649 340 aaKnown RBP21.23■□□□□ 0.99
UFD1-202ENST00000399523 ANAPC4Q9UJX5 808 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 EMSYQ7Z589 1322 aa21.23■□□□□ 0.99
UFD1-202ENST00000399523 F2P00734 622 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 FGRP09769 529 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 GPM6BQ13491 265 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 HERC4Q5GLZ8 1057 aaPredicted RBP21.22■□□□□ 0.99
UFD1-202ENST00000399523 SEPT14Q6ZU15 432 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 EMID1Q96A84 441 aaPredicted RBP21.22■□□□□ 0.99
UFD1-202ENST00000399523 TMEM47Q9BQJ4 181 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 ALG1Q9BT22 464 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 MAF1Q9H063 256 aa21.22■□□□□ 0.99
UFD1-202ENST00000399523 NCK2O43639 380 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 PDHBP11177 359 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 LTBRP36941 435 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 MFSD10Q14728 455 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 KIAA0753Q2KHM9 967 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 EP400NLQ6ZTU2 488 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 CHST3Q7LGC8 479 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 TMEM192Q8IY95 271 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 PHOX2BQ99453 314 aa21.21■□□□□ 0.99
UFD1-202ENST00000399523 NLRC5Q86WI3 1866 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 ZNF200P98182 395 aaPredicted RBP21.2■□□□□ 0.98
UFD1-202ENST00000399523 ZNF543Q08ER8 600 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 SMAD2Q15796 467 aaKnown RBP21.2■□□□□ 0.98
UFD1-202ENST00000399523 CTC1Q2NKJ3 1217 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 PLEKHG4Q58EX7 1191 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 TOP1MTQ969P6 601 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 TCP11L1Q9NUJ3 509 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 CLDND1Q9NY35 253 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 DDX41Q9UJV9 622 aaKnown RBP21.2■□□□□ 0.98
UFD1-202ENST00000399523 COL4A6Q14031 1691 aa21.2■□□□□ 0.98
UFD1-202ENST00000399523 MYH7BA7E2Y1 1941 aa21.19■□□□□ 0.98
UFD1-202ENST00000399523 BMP8AQ7Z5Y6 402 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms