RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 BMP6P22004 513 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CNGA1P29973 690 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 SKOR1P84550 965 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 IKQ13123 557 aaPredicted RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 SPATA24Q86W54 205 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 FAM133AQ8N9E0 248 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 FAM89AQ96GI7 184 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 PLVAPQ9BX97 442 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 NDST4Q9H3R1 872 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 LARSQ9P2J5 1176 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 LEMD3Q9Y2U8 911 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 RAD51CO43502 376 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CCNT1O60563 726 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 UPP2O95045 317 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 ADCY2Q08462 1091 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF790Q6PG37 636 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CAPN12Q6ZSI9 719 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CYB5R4Q7L1T6 521 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 SYCP3Q8IZU3 236 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 SYCE1Q8N0S2 351 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF579Q8NAF0 562 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 IQCDQ96DY2 449 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 IQCGQ9H095 443 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 THAP9Q9H5L6 903 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 DNAJC17Q9NVM6 304 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CHCHD3Q9NX63 227 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 HSD17B3P37058 310 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 SLC1A4P43007 532 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 HERVK_113P62684 666 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 RCN2Q14257 317 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 UAP1Q16222 522 aaPredicted RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 PHLDB2Q86SQ0 1253 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 MB21D2Q8IYB1 491 aaPredicted RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 LRRC8CQ8TDW0 803 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 A1CFQ9NQ94 594 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CTTNBP2NLQ9P2B4 639 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 BIN2Q9UBW5 565 aaPredicted RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 IKBKGQ9Y6K9 419 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 ACSL3O95573 720 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CALM1P0DP23 149 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CALM2P0DP24 149 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CALM3P0DP25 149 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 CETN2P41208 172 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 EVA1CP58658 441 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 ELF3P78545 371 aaPredicted RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 PTPAQ15257 358 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 HAUS3Q68CZ6 603 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 BICDL1Q6ZP65 573 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 PDCD7Q8N8D1 485 aaKnown RBP10.16□□□□□ -0.78
COL28A1-201ENST00000399429 RASGRP4Q8TDF6 673 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 AMOTL2Q9Y2J4 779 aa10.16□□□□□ -0.78
COL28A1-201ENST00000399429 FAM205CA6NFA0 338 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 H2AFZP0C0S5 128 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 FERP16591 822 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 DESP17661 470 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 SEPT6Q14141 434 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 H2AFVQ71UI9 128 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 HS2ST1Q7LGA3 356 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 YTHDF3Q7Z739 585 aaKnown RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 KCNH5Q8NCM2 988 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 PITPNM3Q9BZ71 974 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 LRRC27Q9C0I9 530 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 HOMER2Q9NSB8 354 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 RHBDL2Q9NX52 303 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 CLTCL1P53675 1640 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 CDK12Q9NYV4 1490 aaPredicted RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 TCP11X1B4DZS4 312 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 SART1O43290 800 aaKnown RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 FGGP02679 453 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 HNRNPCP07910 306 aaKnown RBP eCLIP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 LRRC41Q15345 812 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 BZW1Q7L1Q6 419 aaKnown RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 IFNL3Q8IZI9 196 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF444Q8N0Y2 327 aaPredicted RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 PPP1R14CQ8TAE6 165 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 CASKIN2Q8WXE0 1202 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 NAF1Q96HR8 494 aaKnown RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 DHTKD1Q96HY7 919 aaPredicted RBP10.15□□□□□ -0.78
COL28A1-201ENST00000399429 CYTH2Q99418 400 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 ZCWPW1Q9H0M4 648 aa10.15□□□□□ -0.78
COL28A1-201ENST00000399429 MAP3K4Q9Y6R4 1608 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 AGPSO00116 658 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 PPFIA2O75334 1257 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 PECAM1P16284 738 aaPredicted RBP10.15□□□□□ -0.79
COL28A1-201ENST00000399429 CCNE1P24864 410 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 SERPINB4P48594 390 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 INF2Q27J81 1249 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 C6orf118Q5T5N4 469 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 LRRC34Q8IZ02 419 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 SLC17A8Q8NDX2 589 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 PRCCQ92733 491 aaPredicted RBP10.15□□□□□ -0.79
COL28A1-201ENST00000399429 SH2D4AQ9H788 454 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 STOML1Q9UBI4 398 aa10.15□□□□□ -0.79
COL28A1-201ENST00000399429 ARPP21Q9UBL0 812 aaPredicted RBP10.15□□□□□ -0.79
COL28A1-201ENST00000399429 MAP3K7O43318 606 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 THAP12O43422 761 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 SHOX2O60902 331 aaPredicted RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 TECP42680 631 aa10.14□□□□□ -0.79
COL28A1-201ENST00000399429 MRPS35P82673 323 aaKnown RBP10.14□□□□□ -0.79
COL28A1-201ENST00000399429 DEUP1Q05D60 604 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms