RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 CUL4BQ13620 913 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 DIXDC1Q155Q3 683 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 TAOK1Q7L7X3 1001 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 PPFIBP2Q8ND30 876 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 LARP4BQ92615 738 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 EXOC4Q96A65 974 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 RAB17Q9H0T7 212 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 ATP2A2P16615 1042 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 NR2F2P24468 414 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 BTDP43251 543 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 EXOC3L4Q17RC7 722 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 GKAP1Q5VSY0 366 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 CC2D1AQ6P1N0 951 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 KIAA0825Q8IV33 1275 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 FMNL3Q8IVF7 1028 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 PPM1KQ8N3J5 372 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 CCDC97Q96F63 343 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 WDR24Q96S15 920 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 NHEJ1Q9H9Q4 299 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 ADAMTS1Q9UHI8 967 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 PCDHA1Q9Y5I3 950 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 USP17L3A6NCW0 530 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 USP17L4A6NCW7 530 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 KIF28PB7ZC32 967 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 PLCG1P19174 1290 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 ATP5DP30049 168 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 IL6STP40189 918 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-204ENST00000397545 USP17L1Q7RTZ2 530 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 ZNF354CQ86Y25 554 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 DHX40Q8IX18 779 aaKnown RBP11.79□□□□□ -0.52
CCDC40-204ENST00000397545 OSBPL5Q9H0X9 879 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-204ENST00000397545 VPS37BQ9H9H4 285 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 E2F5Q15329 346 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 DOK7Q18PE1 504 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 RESP18Q5W5W9 173 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 FAM178BQ8IXR5 827 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 MAK16Q9BXY0 300 aaKnown RBP11.79□□□□□ -0.52
CCDC40-204ENST00000397545 POLD4Q9HCU8 107 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 MEIS1O00470 390 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 CLIC2O15247 247 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 UBXN2AP68543 259 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 PPP2R5DQ14738 602 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 SHC4Q6S5L8 630 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 FAM133AQ8N9E0 248 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 TBC1D31Q96DN5 1066 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 DNAI2Q9GZS0 605 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 ATP8A1Q9Y2Q0 1164 aa11.79□□□□□ -0.52
CCDC40-204ENST00000397545 SORBS3O60504 671 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 LRRN2O75325 713 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 GAS8O95995 478 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 TNNI1P19237 187 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 NEDD9Q14511 834 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 MESDQ14696 234 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 IQCB1Q15051 598 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 PANX2Q96RD6 677 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 PLA2G12BQ9BX93 195 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 GLT8D2Q9H1C3 349 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 PCDHA4Q9UN74 947 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 PTPN22Q9Y2R2 807 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 FAM169AQ9Y6X4 670 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 JCADQ9P266 1359 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 FRMD3A2A2Y4 597 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 GNA14O95837 355 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 ZBED6P86452 979 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 E4F1Q66K89 784 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-204ENST00000397545 SPICE1Q8N0Z3 855 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 MCUR1Q96AQ8 359 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 DHTKD1Q96HY7 919 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-204ENST00000397545 PIGSQ96S52 555 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 CLEC11AQ9Y240 323 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 ADAMTS7Q9UKP4 1686 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 NEDD4P46934 1319 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 AP5Z1O43299 807 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 SLCO1A2P46721 670 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 TRAPPC10P48553 1259 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 FKBP3Q00688 224 aaKnown RBP11.78□□□□□ -0.52
CCDC40-204ENST00000397545 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.78□□□□□ -0.52
CCDC40-204ENST00000397545 HDAC6Q9UBN7 1215 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 RWDD2AQ9UIY3 292 aa11.78□□□□□ -0.52
CCDC40-204ENST00000397545 MYO1CO00159 1063 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 CCNE1P24864 410 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 PLTPP55058 493 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 ZKSCAN8Q15776 578 aaPredicted RBP11.77□□□□□ -0.52
CCDC40-204ENST00000397545 TCP11X2Q5H9J9 407 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 LIN9Q5TKA1 542 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 MAGOHBQ96A72 148 aaKnown RBP11.77□□□□□ -0.52
CCDC40-204ENST00000397545 SENP2Q9HC62 589 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 ARHGEF10LQ9HCE6 1279 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 ZNF804BA4D1E1 1349 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 CDHR2Q9BYE9 1310 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 RPSAP08865 295 aaKnown RBP11.77□□□□□ -0.52
CCDC40-204ENST00000397545 DLATP10515 647 aaKnown RBP11.77□□□□□ -0.52
CCDC40-204ENST00000397545 FERP16591 822 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 ADCY8P40145 1251 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 ANTXR2P58335 489 aa11.77□□□□□ -0.52
CCDC40-204ENST00000397545 ZBTB22O15209 634 aa11.77□□□□□ -0.53
CCDC40-204ENST00000397545 NMT2O60551 498 aa11.77□□□□□ -0.53
CCDC40-204ENST00000397545 CYP2D6P10635 497 aa11.77□□□□□ -0.53
CCDC40-204ENST00000397545 FDPSP14324 419 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms