RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SLC17A8Q8NDX2 589 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 HINFPQ9BQA5 517 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 CENPKQ9BS16 269 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 IFNAR1P17181 557 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 ZNF589Q86UQ0 364 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 LRRC47Q8N1G4 583 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 KIAA1024Q9UPX6 916 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GCC2Q8IWJ2 1684 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 GOLGA8QA0A0J9YX86 632 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 GOLGA8OA6NCC3 632 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 GOLGA8NF8WBI6 632 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 CTNND1O60716 968 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 MMP1P03956 469 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 GCFC2P16383 781 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 YWHAGP61981 247 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 DMP1Q13316 513 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 CASP8Q14790 479 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 TRIM60Q495X7 471 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 RINT1Q6NUQ1 792 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ACRBPQ8NEB7 543 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 KLHL29Q96CT2 875 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 THAP9Q9H5L6 903 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ZNF277Q9NRM2 450 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 POC1B-GALNT4F8VUJ3 575 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ZMYND10O75800 440 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 DLATP10515 647 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ATP2B4P23634 1241 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 CCNE1P24864 410 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 PSMC2P35998 433 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 PHKA1P46020 1223 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 IRX1P78414 480 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 PPP1R2P3Q6NXS1 205 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 MAGI2Q86UL8 1455 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 MCF2L2Q86YR7 1114 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 HAUS8Q9BT25 410 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 NACA2Q9H009 215 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 TESPA1A2RU30 521 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 H0YIN7 160 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 NDUFA10O95299 355 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ODR4Q5SWX8 454 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 SARM1Q6SZW1 724 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 TCP11Q8WWU5 503 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 NLRP7Q8WX94 980 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 EEF2KMTQ96G04 330 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 GJA3Q9Y6H8 435 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 FAM170AA1A519 330 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 SOWAHDA6NJG2 315 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 SEMA3EO15041 775 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 KRT3P12035 628 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ESRRGP62508 458 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 NNTQ13423 1086 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 GPATCH4Q5T3I0 446 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 FAM81BQ96LP2 452 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 TLR7Q9NYK1 1049 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 ATP8A1Q9Y2Q0 1164 aa11.13□□□□□ -0.63
LIMCH1-203ENST00000396595 CCDC159P0C7I6 412 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 KRT10P13645 584 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SERPINB6P35237 376 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 PLTPP55058 493 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 EIF3BP55884 814 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CUL4BQ13620 913 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 TAF11Q15544 211 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ASPRV1Q53RT3 343 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SMYD4Q8IYR2 804 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SCYL1Q96KG9 808 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ECEL1O95672 775 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 TMEM191BP0C7N4 346 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 PNMA6AP0CW24 399 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ALDH1B1P30837 517 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CHRNDQ07001 517 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 DHX9Q08211 1270 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 C2orf54Q08AI8 447 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ASPHQ12797 758 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 FBXO38Q6PIJ6 1188 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 FBXO41Q8TF61 875 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 PCDHA1Q9Y5I3 950 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SRPRBQ9Y5M8 271 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 RAP1GDS1P52306 607 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ARHGEF16Q5VV41 709 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SLFN13Q68D06 897 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 EMBQ6PCB8 327 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 RSPH3Q86UC2 560 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 FAM186BQ8IYM0 893 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CSRNP1Q96S65 589 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 SAMSN1Q9NSI8 373 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 MAD1L1Q9Y6D9 718 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 H7C0C1 242 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 hCG_1984214I3L0E3 225 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 HNRNPCP07910 306 aaKnown RBP eCLIP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ATP5OP48047 213 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ICA1Q05084 483 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 CERKLQ49MI3 558 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 KAZNQ674X7 775 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ARMCX6Q7L4S7 300 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ZNF713Q8N859 430 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 ZNF653Q96CK0 615 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 DTNBP1Q96EV8 351 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 TUBB6Q9BUF5 446 aa11.12□□□□□ -0.63
LIMCH1-203ENST00000396595 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms