RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 STAM2O75886 525 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 TXNP10599 105 aaKnown RBP24.92■■□□□ 1.58
CLN3-207ENST00000395653 CCSAPQ6IQ19 270 aaPredicted RBP24.92■■□□□ 1.58
CLN3-207ENST00000395653 XRRA1Q6P2D8 792 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 CCDC62Q6P9F0 684 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 SEPT14Q6ZU15 432 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 PCSK9Q8NBP7 692 aaKnown RBP24.92■■□□□ 1.58
CLN3-207ENST00000395653 BACH2Q9BYV9 841 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 SENP6Q9GZR1 1112 aaPredicted RBP24.92■■□□□ 1.58
CLN3-207ENST00000395653 ZMYND12Q9H0C1 365 aa24.92■■□□□ 1.58
CLN3-207ENST00000395653 MOXD2PA6NHM9 499 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 DYNC1LI2O43237 492 aaPredicted RBP24.91■■□□□ 1.58
CLN3-207ENST00000395653 ARIH2O95376 493 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 LARGE1O95461 756 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 RABEP1Q15276 862 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 PCNX4Q63HM2 1172 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 IL27Q8NEV9 243 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 CCDC148Q8NFR7 591 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 GTF3C6Q969F1 213 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 C6orf50Q9HD87 102 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 SH3GLB2Q9NR46 395 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 STK36Q9NRP7 1315 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 KIAA1217Q5T5P2 1943 aa24.91■■□□□ 1.58
CLN3-207ENST00000395653 PDE4DIPQ5VU43 2346 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 RGS20O76081 388 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 FOSP01100 380 aaPredicted RBP24.9■■□□□ 1.58
CLN3-207ENST00000395653 IRX5P78411 483 aaPredicted RBP24.9■■□□□ 1.58
CLN3-207ENST00000395653 MRPS9P82933 396 aaKnown RBP24.9■■□□□ 1.58
CLN3-207ENST00000395653 AP3B2Q13367 1082 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 GNASQ5JWF2 1037 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 KCNV1Q6PIU1 500 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 TBC1D32Q96NH3 1257 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 EHMT1Q9H9B1 1298 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 PCDHA6Q9UN73 950 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 LIMCH1Q9UPQ0 1083 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 PCDHA8Q9Y5H6 950 aa24.9■■□□□ 1.58
CLN3-207ENST00000395653 PTGS1P23219 599 aa24.89■■□□□ 1.58
CLN3-207ENST00000395653 GNA11P29992 359 aa24.89■■□□□ 1.58
CLN3-207ENST00000395653 CLK2P49760 499 aaKnown RBP24.89■■□□□ 1.58
CLN3-207ENST00000395653 ACLYP53396 1101 aa24.89■■□□□ 1.58
CLN3-207ENST00000395653 KCNA10Q16322 511 aa24.89■■□□□ 1.58
CLN3-207ENST00000395653 FSCN1Q16658 493 aaKnown RBP24.89■■□□□ 1.58
CLN3-207ENST00000395653 MRVI1Q9Y6F6 885 aa24.89■■□□□ 1.58
CLN3-207ENST00000395653 GNPTABQ3T906 1256 aa24.88■■□□□ 1.57
CLN3-207ENST00000395653 FAM177A1Q8N128 213 aaPredicted RBP24.88■■□□□ 1.57
CLN3-207ENST00000395653 NECAB1Q8N987 351 aa24.88■■□□□ 1.57
CLN3-207ENST00000395653 DPF3Q92784 378 aa24.88■■□□□ 1.57
CLN3-207ENST00000395653 INPP4AQ96PE3 977 aaPredicted RBP24.88■■□□□ 1.57
CLN3-207ENST00000395653 VPS54Q9P1Q0 977 aa24.88■■□□□ 1.57
CLN3-207ENST00000395653 DDX41Q9UJV9 622 aaKnown RBP24.88■■□□□ 1.57
CLN3-207ENST00000395653 A0A1W2PQ45 241 aaPredicted RBP24.87■■□□□ 1.57
CLN3-207ENST00000395653 A0A1W2PQY0 241 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 CTDNEP1O95476 244 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 ASGR1P07306 291 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 BEX3Q00994 111 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 MCTP2Q6DN12 878 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 OR6J1Q8NGC5 347 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 FERMT2Q96AC1 680 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 ANO3Q9BYT9 981 aa24.87■■□□□ 1.57
CLN3-207ENST00000395653 ZEB2O60315 1214 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 TGFB3P10600 412 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 CPT1AP50416 773 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 LY6KQ17RY6 165 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 REXO1Q8N1G1 1221 aaKnown RBP24.86■■□□□ 1.57
CLN3-207ENST00000395653 BICD2Q8TD16 824 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 COPS5Q92905 334 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 GH1P01241 217 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 ICAM3P32942 547 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 LRRC26Q2I0M4 334 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 SLC39A5Q6ZMH5 540 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 ZFP91Q96JP5 570 aaPredicted RBP24.86■■□□□ 1.57
CLN3-207ENST00000395653 ZSCAN31Q96LW9 406 aaPredicted RBP24.86■■□□□ 1.57
CLN3-207ENST00000395653 GLT1D1Q96MS3 346 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 TMEM260Q9NX78 707 aa24.86■■□□□ 1.57
CLN3-207ENST00000395653 ALPK3Q96L96 1907 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 ST18O60284 1047 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 EVI5O60447 810 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 ATN1P54259 1190 aaPredicted RBP24.85■■□□□ 1.57
CLN3-207ENST00000395653 ARHGAP1Q07960 439 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 SNX17Q15036 470 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 BRDTQ58F21 947 aaPredicted RBP24.85■■□□□ 1.57
CLN3-207ENST00000395653 C1orf53Q5VUE5 145 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 EMID1Q96A84 441 aaPredicted RBP24.85■■□□□ 1.57
CLN3-207ENST00000395653 RTEL1Q9NZ71 1219 aa24.85■■□□□ 1.57
CLN3-207ENST00000395653 ELP1O95163 1332 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 A6NJR5 290 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 FIBPO43427 364 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 JAKMIP3Q5VZ66 844 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 NLRX1Q86UT6 975 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 NSUN7Q8NE18 718 aaKnown RBP24.84■■□□□ 1.57
CLN3-207ENST00000395653 PGBD1Q96JS3 809 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 STARD7Q9NQZ5 370 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 NR2E3Q9Y5X4 410 aa24.84■■□□□ 1.57
CLN3-207ENST00000395653 SPATA31C2B4DYI2 1134 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 CABYRO75952 493 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 SREBF1P36956 1147 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 NLRP5P59047 1200 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 ST3GAL1Q11201 340 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 WASF1Q92558 559 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 GPRASP2Q96D09 838 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms