RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 MREGQ8N565 214 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 EIF1ADQ8N9N8 165 aaKnown RBP11.07□□□□□ -0.64
COL17A1-203ENST00000393211 NEDD1Q8NHV4 660 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 BAP1Q92560 729 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 LARP4BQ92615 738 aaKnown RBP11.07□□□□□ -0.64
COL17A1-203ENST00000393211 LRRC1Q9BTT6 524 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 BLOC1S4Q9NUP1 217 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 CEP72Q9P209 647 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 LEMD3Q9Y2U8 911 aa11.07□□□□□ -0.64
COL17A1-203ENST00000393211 SHTN1A0MZ66 631 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 USP17L3A6NCW0 530 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 USP17L4A6NCW7 530 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 EBAG9O00559 213 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 CES2O00748 559 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 MOCS3O95396 460 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 KLRK1P26718 216 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 TECP42680 631 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 NOP2P46087 812 aaKnown RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 SLC9C1Q4G0N8 1177 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 HAUS3Q68CZ6 603 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 LRRC55Q6ZSA7 311 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 C15orf52Q6ZUT6 534 aaKnown RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 C16orf86Q6ZW13 317 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 USP17L1Q7RTZ2 530 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 KRT26Q7Z3Y9 468 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 TBCKQ8TEA7 893 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 RAD54LQ92698 747 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 CDK5RAP3Q96JB5 506 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 CEP63Q96MT8 703 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 RUFY1Q96T51 708 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 MMRN2Q9H8L6 949 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 SLC39A2Q9NP94 309 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 DMGDHQ9UI17 866 aaKnown RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 NRAPQ86VF7 1730 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 MYMKA6NI61 221 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 LRRC53A6NM62 1247 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 SRRM3A6NNA2 597 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 EIF3HO15372 352 aaKnown RBP eCLIP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 ZEB2O60315 1214 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 ZMYND10O75800 440 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 SERPING1P05155 500 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 PLEKP08567 350 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 PLCG2P16885 1265 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 MARSP56192 900 aaKnown RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 PAK2Q13177 524 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 CALCRLQ16602 461 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 TMEM119Q4V9L6 283 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 PPP1R18Q6NYC8 613 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 C8orf74Q6P047 294 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 RRAGAQ7L523 313 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 CACNA2D4Q7Z3S7 1137 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 CD302Q8IX05 232 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 MARCH10Q8NA82 808 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 SH3RF3Q8TEJ3 882 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 DYNLL2Q96FJ2 89 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 PNMA5Q96PV4 448 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 TLR10Q9BXR5 811 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 RIOX1Q9H6W3 641 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 MLXIPQ9HAP2 919 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 GDF3Q9NR23 364 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 FAM207AQ9NSI2 230 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-203ENST00000393211 TFCP2L1Q9NZI6 479 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 STX8Q9UNK0 236 aa11.06□□□□□ -0.64
COL17A1-203ENST00000393211 ATAD5Q96QE3 1844 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 DDX60LQ5H9U9 1706 aaKnown RBP11.05□□□□□ -0.64
COL17A1-203ENST00000393211 BTNL10A8MVZ5 291 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 FKBP3Q00688 224 aaKnown RBP11.05□□□□□ -0.64
COL17A1-203ENST00000393211 C10orf76Q5T2E6 689 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 RC3H1Q5TC82 1133 aaKnown RBP11.05□□□□□ -0.64
COL17A1-203ENST00000393211 KLHDC7AQ5VTJ3 777 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 KRT79Q5XKE5 535 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 HGSNATQ68CP4 663 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 NFRKBQ6P4R8 1299 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 TPTE2Q6XPS3 522 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 TADA2BQ86TJ2 420 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 RIN2Q8WYP3 895 aaPredicted RBP11.05□□□□□ -0.64
COL17A1-203ENST00000393211 NAP1L4Q99733 375 aaKnown RBP11.05□□□□□ -0.64
COL17A1-203ENST00000393211 NARFQ9UHQ1 456 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 ATP8B3O60423 1300 aa11.05□□□□□ -0.64
COL17A1-203ENST00000393211 AHDC1Q5TGY3 1603 aaPredicted RBP11.04□□□□□ -0.64
COL17A1-203ENST00000393211 SNED1Q8TER0 1413 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 EPHB6O15197 1021 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 TXKP42681 527 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 CDK8P49336 464 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 NAB2Q15742 525 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 ZCWPW2Q504Y3 356 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 HYIQ5T013 277 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 SFMBT2Q5VUG0 894 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 TBC1D9BQ66K14 1250 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 PPP4R3AQ6IN85 833 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 BARGINQ6ZT62 677 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 B4GALNT4Q76KP1 1039 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 GSPT2Q8IYD1 628 aaKnown RBP11.04□□□□□ -0.64
COL17A1-203ENST00000393211 MYOCDQ8IZQ8 938 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 SMCR8Q8TEV9 937 aaPredicted RBP11.04□□□□□ -0.64
COL17A1-203ENST00000393211 WHAMMQ8TF30 809 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 ACSBG1Q96GR2 724 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 SETDB2Q96T68 719 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 EYA3Q99504 573 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 PCDHGC5Q9Y5F6 944 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms