RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 LRCH2Q5VUJ6 765 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 KRT79Q5XKE5 535 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 TMEM179Q6ZVK1 233 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 PPFIBP1Q86W92 1011 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 NELFCDQ8IXH7 590 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 BPIFA3Q9BQP9 254 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 LZTFL1Q9NQ48 299 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 PIM2Q9P1W9 311 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 E9PMD0 336 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 MYO1BO43795 1136 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 SORBS3O60504 671 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 UBXN1Q04323 297 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 C1QTNF12Q5T7M4 302 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 ARL6IP4Q66PJ3 421 aaKnown RBP12.06□□□□□ -0.48
NEDD9-201ENST00000379433 FBXO11Q86XK2 927 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 CCAR2Q8N163 923 aaKnown RBP12.06□□□□□ -0.48
NEDD9-201ENST00000379433 MICALL1Q8N3F8 863 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 ENOX1Q8TC92 643 aaKnown RBP12.06□□□□□ -0.48
NEDD9-201ENST00000379433 SH2D3AQ9BRG2 576 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 EFCC1Q9HA90 598 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 KIAA1024Q9UPX6 916 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 NKRFO15226 690 aaKnown RBP eCLIP12.05□□□□□ -0.48
NEDD9-201ENST00000379433 ENOX2Q16206 610 aaKnown RBP12.05□□□□□ -0.48
NEDD9-201ENST00000379433 FILIP1LQ4L180 1135 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 SPATA1Q5VX52 437 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 E4F1Q66K89 784 aaPredicted RBP12.05□□□□□ -0.48
NEDD9-201ENST00000379433 VSTM4Q8IW00 320 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 DNAI1Q9UI46 699 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 POTEB3A0JP26 581 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 SOWAHDA6NJG2 315 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 POTECB2RU33 542 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 STK10O94804 968 aaKnown RBP12.05□□□□□ -0.48
NEDD9-201ENST00000379433 CDC25BP30305 580 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 CASP14P31944 242 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 RBL2Q08999 1139 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 SPECC1LQ69YQ0 1117 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 POTEBQ6S5H4 581 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 SUPT20HQ8NEM7 779 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 NOC3LQ8WTT2 800 aaKnown RBP12.05□□□□□ -0.48
NEDD9-201ENST00000379433 ZBTB21Q9ULJ3 1066 aa12.05□□□□□ -0.48
NEDD9-201ENST00000379433 A0A0U1RQJ8 604 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 WNT10BO00744 389 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 CAPN15O75808 1086 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 KCNA3P22001 575 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 KRT31Q15323 416 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 ECM1Q16610 540 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 DALRD3Q5D0E6 543 aaKnown RBP12.04□□□□□ -0.48
NEDD9-201ENST00000379433 MAEAQ7L5Y9 396 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 RTKN2Q8IZC4 609 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 CSGALNACT2Q8N6G5 542 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 CCDC112Q8NEF3 446 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 ATRIPQ8WXE1 791 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 IRX2Q9BZI1 471 aaPredicted RBP12.04□□□□□ -0.48
NEDD9-201ENST00000379433 KLHL42Q9P2K6 505 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 IGKV6D-41A0A0C4DH26 115 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 KCNJ18B7U540 433 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 KCNJ12Q14500 433 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 RASA3Q14644 834 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 SYDE2Q5VT97 1194 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 GALNT17Q6IS24 598 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 SV2BQ7L1I2 683 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 P2RX7Q99572 595 aaKnown RBP12.04□□□□□ -0.48
NEDD9-201ENST00000379433 BAG1Q99933 345 aaPredicted RBP12.04□□□□□ -0.48
NEDD9-201ENST00000379433 IDI2Q9BXS1 227 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 ZNF341Q9BYN7 854 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 ANO3Q9BYT9 981 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 TANGO6Q9C0B7 1094 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 TAOK3Q9H2K8 898 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 ZSWIM4Q9H7M6 989 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 SPTLC3Q9NUV7 552 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 POTEFA5A3E0 1075 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 POTEIP0CG38 1075 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 HMGB2P26583 209 aaKnown RBP12.04□□□□□ -0.48
NEDD9-201ENST00000379433 POTEGQ6S5H5 508 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 POTEEQ6S8J3 1075 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 TOGARAM2Q6ZUX3 1019 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 SH3RF1Q7Z6J0 888 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 MMTAG2Q9BU76 263 aaKnown RBP12.04□□□□□ -0.48
NEDD9-201ENST00000379433 AMNQ9BXJ7 453 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 TSPYL1Q9H0U9 437 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 ZNRF3Q9ULT6 936 aa12.04□□□□□ -0.48
NEDD9-201ENST00000379433 SFI1A8K8P3 1242 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 NAT1P18440 290 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 PABPC4Q13310 644 aaKnown RBP eCLIP12.03□□□□□ -0.48
NEDD9-201ENST00000379433 CCDC150Q8NCX0 1101 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 RIC8AQ9NPQ8 531 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 PRR12Q9ULL5 1215 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 COL11A2P13942 1736 aaPredicted RBP12.03□□□□□ -0.48
NEDD9-201ENST00000379433 MYMKA6NI61 221 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 PSMA7O14818 248 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 MTIF2P46199 727 aaKnown RBP12.03□□□□□ -0.48
NEDD9-201ENST00000379433 KLK7P49862 253 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 STAT2P52630 851 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 CBX1P83916 185 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 STIM1Q13586 685 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 NT5DC1Q5TFE4 455 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 ZNF658Q5TYW1 1059 aaPredicted RBP12.03□□□□□ -0.48
NEDD9-201ENST00000379433 TRIML1Q8N9V2 468 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 ANKRD20A12PQ8NF67 263 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 TRIM9Q9C026 710 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms