RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PFKFB3Q16875 520 aaPredicted RBP17.5■□□□□ 0.39
CKAP4-201ENST00000378026 TXNRD1Q16881 649 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 DYMQ7RTS9 669 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 SEC16BQ96JE7 1060 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 MTA3Q9BTC8 594 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 KANSL2Q9H9L4 492 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 NOVA2Q9UNW9 492 aaKnown RBP17.5■□□□□ 0.39
CKAP4-201ENST00000378026 LEMD3Q9Y2U8 911 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 DCDC2CA8MYV0 355 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 SKAP2O75563 359 aaPredicted RBP17.5■□□□□ 0.39
CKAP4-201ENST00000378026 KLRC1P26715 233 aa17.5■□□□□ 0.39
CKAP4-201ENST00000378026 GLI3P10071 1580 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 C21orf2O43822 256 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 PDE8AO60658 829 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CALM1P0DP23 149 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CALM2P0DP24 149 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CALM3P0DP25 149 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 EZRP15311 586 aaKnown RBP17.49■□□□□ 0.39
CKAP4-201ENST00000378026 ANKRD20A8PQ5CZ79 823 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 FIGNQ5HY92 759 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CHADLQ6NUI6 762 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CPLX4Q7Z7G2 160 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 ZSCAN29Q8IWY8 852 aaPredicted RBP17.49■□□□□ 0.39
CKAP4-201ENST00000378026 KIAA0895Q8NCT3 520 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 PAGR1Q9BTK6 254 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 AP1M1Q9BXS5 423 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CNOT8Q9UFF9 292 aaKnown RBP17.49■□□□□ 0.39
CKAP4-201ENST00000378026 LMTK3Q96Q04 1460 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 WTIPA6NIX2 430 aaPredicted RBP17.49■□□□□ 0.39
CKAP4-201ENST00000378026 NAA25Q14CX7 972 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 WHAMMQ8TF30 809 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 PACSIN1Q9BY11 444 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 BAIAP2L1Q9UHR4 511 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 KCNK3O14649 394 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 ERVK-9P63128 1117 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 LRRC41Q15345 812 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CDC37Q16543 378 aaPredicted RBP17.49■□□□□ 0.39
CKAP4-201ENST00000378026 PPP4R3AQ6IN85 833 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 CD302Q8IX05 232 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 ARFGAP2Q8N6H7 521 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 SGSM3Q96HU1 749 aa17.49■□□□□ 0.39
CKAP4-201ENST00000378026 PARP4Q9UKK3 1724 aaKnown RBP17.48■□□□□ 0.39
CKAP4-201ENST00000378026 FAM170AA1A519 330 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 GBP2P32456 591 aaPredicted RBP17.48■□□□□ 0.39
CKAP4-201ENST00000378026 SCTRP47872 440 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 CACNA2D3Q8IZS8 1091 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 STAG2Q8N3U4 1231 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 TCP11L1Q9NUJ3 509 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 MROH5Q6ZUA9 1318 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 ERVV-2B6SEH9 535 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 HNRNPH3P31942 346 aaKnown RBP17.48■□□□□ 0.39
CKAP4-201ENST00000378026 FLT3P36888 993 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 TECP42680 631 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 WLSQ5T9L3 541 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 HEATR3Q7Z4Q2 680 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 MDM1Q8TC05 714 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 RAPGEF5Q92565 580 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 TBC1D5Q92609 795 aa17.48■□□□□ 0.39
CKAP4-201ENST00000378026 TNS3Q68CZ2 1445 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 PLCB4Q15147 1175 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 LETM2Q2VYF4 491 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 BAP1Q92560 729 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 NEUROG2Q9H2A3 272 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 TAF1DQ9H5J8 278 aaPredicted RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 ACTR5Q9H9F9 607 aaPredicted RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 PCDH11XQ9BZA7 1347 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 PCDH11YQ9BZA8 1340 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 DDAH1O94760 285 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 GCFC2P16383 781 aaKnown RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 MAGOHP61326 146 aaKnown RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 UAP1Q16222 522 aaPredicted RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 KIAA0753Q2KHM9 967 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 PROSER2Q86WR7 435 aaPredicted RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 MREGQ8N565 214 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 MAGOHBQ96A72 148 aaKnown RBP17.47■□□□□ 0.39
CKAP4-201ENST00000378026 LRRC4CQ9HCJ2 640 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 PCDHA4Q9UN74 947 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 FER1L4A9Z1Z3 1794 aa17.47■□□□□ 0.39
CKAP4-201ENST00000378026 TRAPPC3O43617 180 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 CEP104O60308 925 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 LCA5LO95447 670 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 CALML3P27482 149 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 ZNF844Q08AG5 666 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 ACCSLQ4AC99 568 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 PDXDC1Q6P996 788 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 ADAMTS1Q9UHI8 967 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 TSPY2A6NKD2 308 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 PJA2O43164 708 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 CYP2D6P10635 497 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 HSPA9P38646 679 aaKnown RBP17.46■□□□□ 0.39
CKAP4-201ENST00000378026 GYG1P46976 350 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 TNNC1P63316 161 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 PPP1R7Q15435 360 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 HIBCHQ6NVY1 386 aaPredicted RBP17.46■□□□□ 0.39
CKAP4-201ENST00000378026 GLIS3Q8NEA6 775 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 TAF4BQ92750 862 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 HVCN1Q96D96 273 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 TMOD3Q9NYL9 352 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 FBXL5Q9UKA1 691 aa17.46■□□□□ 0.39
CKAP4-201ENST00000378026 POLR2FP61218 127 aaKnown RBP17.46■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms