RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 MYCBPQ99417 103 aaPredicted RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 SNX25Q9H3E2 840 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 FGFR1OP2Q9NVK5 253 aa11.51□□□□□ -0.57
RTN3-206ENST00000377819 FARP1Q9Y4F1 1045 aaPredicted RBP11.51□□□□□ -0.57
RTN3-206ENST00000377819 DAB1O75553 588 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 DLATP10515 647 aaKnown RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 MCF2P10911 925 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 TRIM27P14373 513 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 MSH2P43246 934 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 SNCBQ16143 134 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 TEDDM1Q5T9Z0 273 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 LRRC8BQ6P9F7 803 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 DPP8Q6V1X1 898 aaPredicted RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 CABP7Q86V35 215 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 CCDC197Q8NCU1 140 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.5□□□□□ -0.57
RTN3-206ENST00000377819 CCDC127Q96BQ5 260 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 ABCC1P33527 1531 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 MT-ND3P03897 115 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 HNRNPCP07910 306 aaKnown RBP eCLIP11.5□□□□□ -0.573e-6■■■□□ 17
RTN3-206ENST00000377819 HDAC4P56524 1084 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 BRD3Q15059 726 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 RMDN2Q96LZ7 410 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 C8orf37Q96NL8 207 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 SELENONQ9NZV5 590 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 ATP8B3O60423 1300 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 TAC1P20366 129 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 POSTNQ15063 836 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 CCDC92Q53HC0 331 aaPredicted RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 ARHGEF16Q5VV41 709 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 C16orf62Q7Z3J2 963 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.5□□□□□ -0.57
RTN3-206ENST00000377819 SLC17A8Q8NDX2 589 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 EDEM3Q9BZQ6 932 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 TMEM245Q9H330 911 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 IMPACTQ9P2X3 320 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 FBXO2Q9UK22 296 aaPredicted RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 TTC41PQ6P2S7 1318 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 KDM5CP41229 1560 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 M0R2C6 588 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 MRPL28Q13084 256 aaKnown RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 NBPF20Q3BBV1 942 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 ODR4Q5SWX8 454 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 NBPF10Q6P3W6 841 aaKnown RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 ARHGEF18Q6ZSZ5 1173 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 ARMCX2Q7L311 632 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 DPP9Q86TI2 863 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 RFX6Q8HWS3 928 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 KSR1Q8IVT5 923 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 MYOCDQ8IZQ8 938 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 APPL2Q8NEU8 664 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 SH3KBP1Q96B97 665 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 APOL6Q9BWW8 343 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 CCDC90BQ9GZT6 254 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 GPBP1L1Q9HC44 474 aaPredicted RBP11.5□□□□□ -0.57
RTN3-206ENST00000377819 PALMDQ9NP74 551 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 ANGPTL2Q9UKU9 493 aa11.5□□□□□ -0.57
RTN3-206ENST00000377819 GOLGA8MH3BSY2 632 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 MEIS1O00470 390 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 ANXA13P27216 316 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 OAS2P29728 719 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 FAM160B1Q5W0V3 765 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 NUDT18Q6ZVK8 323 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 NME9Q86XW9 330 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 ST13P4Q8IZP2 240 aaPredicted RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 ATP6V0A4Q9HBG4 840 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 G3BP2Q9UN86 482 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 L3MBTL1Q9Y468 752 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 MCF2LO15068 1137 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 TRPC1P48995 793 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 EIF2B5Q13144 721 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 KCTD2Q14681 263 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 TADA1Q96BN2 335 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 TRIM11Q96F44 468 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 RUBCNLQ9H714 662 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 ARHGAP26Q9UNA1 814 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 CAB39Q9Y376 341 aaPredicted RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 SGK1O00141 431 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 IFNAR2P48551 515 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 ARPP19P56211 112 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 SKIV2LQ15477 1246 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 C16orf87Q6PH81 154 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 PPHLN1Q8NEY8 458 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 TBC1D22AQ8WUA7 517 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 CAPS2Q9BXY5 557 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 MRPL11Q9Y3B7 192 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 COL4A3BPQ9Y5P4 624 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 RNF103-CHMP3A0A140T963 221 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 CREB3O43889 395 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 ALAS1P13196 640 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 PRIM1P49642 420 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 ATP1A2P50993 1020 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 POLGP54098 1239 aaPredicted RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 VCPP55072 806 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 MEI1Q5TIA1 1274 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 SULF1Q8IWU6 871 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 MAGOHBQ96A72 148 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 ANGEL1Q9UNK9 670 aaKnown RBP11.49□□□□□ -0.57
RTN3-206ENST00000377819 WDR7Q9Y4E6 1490 aa11.49□□□□□ -0.57
RTN3-206ENST00000377819 EMILIN1Q9Y6C2 1016 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms