RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZBTB8AQ96BR9 441 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 RNF38Q9H0F5 515 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 LUC7LQ9NQ29 371 aaKnown RBP3.64□□□□□ -1.83
VPS13A-206ENST00000376646 RTEL1Q9NZ71 1219 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 NUDT5Q9UKK9 219 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 NAT2P11245 290 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 STAT5AP42229 794 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 KCNC1P48547 511 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 ARID5AQ03989 594 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 TNNI3KQ59H18 835 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 NT5DC1Q5TFE4 455 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 FERMT3Q86UX7 667 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 PPIL6Q8IXY8 311 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 DIO2Q92813 273 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 GORASP1Q9BQQ3 440 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 SPATA6Q9NWH7 488 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-206ENST00000376646 PALD1Q9ULE6 856 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 PCDHA2Q9Y5H9 948 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 GFRA1P56159 465 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 CACNB2Q08289 660 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-206ENST00000376646 FXNQ16595 210 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 SKOR2Q2VWA4 1001 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-206ENST00000376646 SLC10A6Q3KNW5 377 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 MILR1Q7Z6M3 343 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 NLGN1Q8N2Q7 840 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 DDX1Q92499 740 aaKnown RBP3.63□□□□□ -1.83
VPS13A-206ENST00000376646 TIMM13Q9Y5L4 95 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-206ENST00000376646 DUSP10Q9Y6W6 482 aa3.63□□□□□ -1.83
VPS13A-206ENST00000376646 MEFVO15553 781 aaPredicted RBP3.62□□□□□ -1.83
VPS13A-206ENST00000376646 RPL11P62913 178 aaKnown RBP3.62□□□□□ -1.83
VPS13A-206ENST00000376646 PPP2R2AP63151 447 aa3.62□□□□□ -1.83
VPS13A-206ENST00000376646 GNL2Q13823 731 aaKnown RBP3.62□□□□□ -1.83
VPS13A-206ENST00000376646 SLC9A5Q14940 896 aa3.62□□□□□ -1.83
VPS13A-206ENST00000376646 CD300LDQ6UXZ3 194 aa3.62□□□□□ -1.83
VPS13A-206ENST00000376646 ANKS3Q6ZW76 656 aa3.62□□□□□ -1.83
VPS13A-206ENST00000376646 TRMT2BQ96GJ1 504 aaKnown RBP3.62□□□□□ -1.83
VPS13A-206ENST00000376646 C1orf159Q96HA4 380 aa3.62□□□□□ -1.83
VPS13A-206ENST00000376646 CHAMP1Q96JM3 812 aa3.62□□□□□ -1.83
VPS13A-206ENST00000376646 HOXC12P31275 282 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 RTP5Q14D33 572 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 DCP2Q8IU60 420 aaKnown RBP3.61□□□□□ -1.83
VPS13A-206ENST00000376646 CARFQ8N187 725 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 TMEM169Q96HH4 297 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 IER2Q9BTL4 223 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 BDH2Q9BUT1 245 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 PPARGC1AQ9UBK2 798 aaKnown RBP3.61□□□□□ -1.83
VPS13A-206ENST00000376646 A0A1W2PQU0 124 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 MSCO60682 206 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 ZBTB7AO95365 584 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 SCG5P05408 212 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 CYP2C8P10632 490 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 SYN1P17600 705 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 KRTAP10-2P60368 255 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 ETV3LQ6ZN32 361 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 ARRDC4Q8NCT1 418 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 CPA5Q8WXQ8 436 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 AP5M1Q9H0R1 490 aa3.61□□□□□ -1.83
VPS13A-206ENST00000376646 SH3D21A4FU49 640 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 CAPNS1P04632 268 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 DDR2Q16832 855 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 SLC35F1Q5T1Q4 408 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 EEPD1Q7L9B9 569 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 RBM12BQ8IXT5 1001 aaKnown RBP3.6□□□□□ -1.83
VPS13A-206ENST00000376646 ZSWIM3Q96MP5 696 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 C11orf84Q9BUA3 381 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-206ENST00000376646 JAM3Q9BX67 310 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 USP40Q9NVE5 1235 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 CLDND1Q9NY35 253 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 RBPJLQ9UBG7 517 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 X6R8D5 127 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 BLACEA4D250 179 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 LTBRP36941 435 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 KCNAB2Q13303 367 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 CR1LQ2VPA4 569 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 YOD1Q5VVQ6 348 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-206ENST00000376646 E4F1Q66K89 784 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-206ENST00000376646 FRMD5Q7Z6J6 570 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 ZNF761Q86XN6 746 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-206ENST00000376646 CXorf38Q8TB03 319 aa3.6□□□□□ -1.83
VPS13A-206ENST00000376646 KLF4O43474 513 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 MYO1BO43795 1136 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 NOBOXO60393 691 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 DLX3O60479 287 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 CELA3BP08861 270 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 CNR2P34972 360 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 SARSP49591 514 aaKnown RBP3.59□□□□□ -1.83
VPS13A-206ENST00000376646 ITGA1P56199 1179 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 CAP1Q01518 475 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 MROH9Q5TGP6 573 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 IQCEQ6IPM2 695 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 USP53Q70EK8 1073 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 MIB1Q86YT6 1006 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 Q8N1Y9 231 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 LINC00482Q8N8I6 264 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 SEC14L1Q92503 715 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 TEPSINQ96N21 525 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 CDIP1Q9H305 208 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 NTMQ9P121 344 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 WASF3Q9UPY6 502 aa3.59□□□□□ -1.83
VPS13A-206ENST00000376646 R3HCC1Q9Y3T6 440 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms