RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TMED8Q6PL24 325 aaPredicted RBP18.15■□□□□ 0.5
SDC4-201ENST00000372733 KAT2BQ92831 832 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 CAVIN3Q969G5 261 aa18.15■□□□□ 0.5
SDC4-201ENST00000372733 SMCO2A6NFE2 343 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 ZPR1O75312 459 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 NAP1L1P55209 391 aaKnown RBP18.14■□□□□ 0.49
SDC4-201ENST00000372733 COBLL1Q53SF7 1204 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 SV2BQ7L1I2 683 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 TBCKQ8TEA7 893 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 FAM107BQ9H098 131 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 MAST2Q6P0Q8 1798 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 PJA2O43164 708 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 KRT14P02533 472 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 ATP1A2P50993 1020 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 LRRC41Q15345 812 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 LRRC55Q6ZSA7 311 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 NLRC4Q9NPP4 1024 aa18.14■□□□□ 0.49
SDC4-201ENST00000372733 GLI1P08151 1106 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 FAM153BP0C7A2 387 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 EPB41P11171 864 aaKnown RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 CARSP49589 748 aaKnown RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 ASTE1Q2TB18 679 aaPredicted RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 FAM153CQ494X1 144 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 ALS2CLQ60I27 953 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 SMIM5Q71RC9 77 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 CACNA2D4Q7Z3S7 1137 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 CCDC84Q86UT8 332 aaPredicted RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 NOX5Q96PH1 765 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 PNMA5Q96PV4 448 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 TANGO6Q9C0B7 1094 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 TMEM260Q9NX78 707 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 FAM153AQ9UHL3 310 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 SAP30BPQ9UHR5 308 aaKnown RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 NFU1Q9UMS0 254 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 ERLIN2O94905 339 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 TNFRSF8P28908 595 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 HGSNATQ68CP4 663 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 UNC13DQ70J99 1090 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 CCDC24Q8N4L8 307 aa18.13■□□□□ 0.49
SDC4-201ENST00000372733 CCDC43Q96MW1 224 aaKnown RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 BIN2Q9UBW5 565 aaPredicted RBP18.13■□□□□ 0.49
SDC4-201ENST00000372733 DIXDC1Q155Q3 683 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 SLC51AQ86UW1 340 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 VAT1LQ9HCJ6 419 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 C6orf50Q9HD87 102 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 ROBO3Q96MS0 1386 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 FTCDO95954 541 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 SKOR1P84550 965 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 USP17L2Q6R6M4 530 aa18.12■□□□□ 0.49
SDC4-201ENST00000372733 ZNF444Q8N0Y2 327 aaPredicted RBP18.12■□□□□ 0.49
SDC4-201ENST00000372733 LARP4BQ92615 738 aaKnown RBP18.12■□□□□ 0.49
SDC4-201ENST00000372733 POTEMA6NI47 508 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 HEXIM1O94992 359 aaKnown RBP18.11■□□□□ 0.49
SDC4-201ENST00000372733 RASA1P20936 1047 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 RPS8P62241 208 aaKnown RBP18.11■□□□□ 0.49
SDC4-201ENST00000372733 GUF1Q8N442 669 aaKnown RBP18.11■□□□□ 0.49
SDC4-201ENST00000372733 IFT81Q8WYA0 676 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 SPZ1Q9BXG8 430 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 GUCY2FP51841 1108 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 GUCY2DQ02846 1103 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 KCNMA1Q12791 1236 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 NNTQ13423 1086 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 CFAP221Q4G0U5 840 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 TGFBRAP1Q8WUH2 860 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 CDK5RAP3Q96JB5 506 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 EPB41L5Q9HCM4 733 aa18.11■□□□□ 0.49
SDC4-201ENST00000372733 NDUFAB1O14561 156 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 SLC37A4O43826 429 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 APBA1Q02410 837 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 GRIK5Q16478 980 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 KCNK18Q7Z418 384 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 REXO1Q8N1G1 1221 aaKnown RBP18.1■□□□□ 0.49
SDC4-201ENST00000372733 NUDT12Q9BQG2 462 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 PACSIN2Q9UNF0 486 aaPredicted RBP18.1■□□□□ 0.49
SDC4-201ENST00000372733 ZNF233A6NK53 670 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 TLR2O60603 784 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 PALMO75781 387 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 GNA11P29992 359 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 LRRC63Q05C16 580 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 CALCRLQ16602 461 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 CFAP58Q5T655 872 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 SOGA3Q5TF21 947 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 MMS22LQ6ZRQ5 1243 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 MAPKAPK5Q8IW41 473 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 IFT20Q8IY31 132 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 PIGSQ96S52 555 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 GDF3Q9NR23 364 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 STK17AQ9UEE5 414 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 ABCB11O95342 1321 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 CCDC88AQ3V6T2 1871 aa18.1■□□□□ 0.49
SDC4-201ENST00000372733 SSU72P8A0A1W2PR75 194 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 ZEB2O60315 1214 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 TDP2O95551 362 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 FGFR1OPO95684 399 aaKnown RBP18.09■□□□□ 0.49
SDC4-201ENST00000372733 FBXW10Q5XX13 1052 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 LZTS2Q9BRK4 669 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 ZNF335Q9H4Z2 1342 aaPredicted RBP18.09■□□□□ 0.49
SDC4-201ENST00000372733 PVALEFA0A1B0GWK0 134 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 RNASE9P60153 205 aaKnown RBP18.09■□□□□ 0.49
SDC4-201ENST00000372733 PAK2Q13177 524 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms