RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ZMYND12Q9H0C1 365 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 SPATA31A1Q5TZJ5 1347 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 TMEM266Q2M3C6 531 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 IQCEQ6IPM2 695 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 WDR66Q8TBY9 1149 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 C7orf25Q9BPX7 421 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 JRKLQ9Y4A0 524 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 NPHP3-ACAD11A0A0J9YXS1 232 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 POLR2FP61218 127 aaKnown RBP13.45□□□□□ -0.26
CLIP3-201ENST00000360535 KRT79Q5XKE5 535 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 RETREG2Q8NC44 543 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 BLOC1S4Q9NUP1 217 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 SAMM50Q9Y512 469 aa13.45□□□□□ -0.26
CLIP3-201ENST00000360535 MPHOSPH10O00566 681 aaKnown RBP13.44□□□□□ -0.26
CLIP3-201ENST00000360535 RAPGEF1Q13905 1077 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 NYXQ9GZU5 481 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 SH2D4AQ9H788 454 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 AGPSO00116 658 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 LAD1O00515 517 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 ZEB2O60315 1214 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 UFL1O94874 794 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 C8orf74Q6P047 294 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 SH2D3CQ8N5H7 860 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 MTMR8Q96EF0 704 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 AK8Q96MA6 479 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 PNMA5Q96PV4 448 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 GOLPH3Q9H4A6 298 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 RBM12Q9NTZ6 932 aaKnown RBP13.44□□□□□ -0.26
CLIP3-201ENST00000360535 PLAGL2Q9UPG8 496 aa13.44□□□□□ -0.26
CLIP3-201ENST00000360535 KRT18P05783 430 aaKnown RBP13.43□□□□□ -0.26
CLIP3-201ENST00000360535 EPS15P42566 896 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 ERGIC2Q96RQ1 377 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 TSGA10Q9BZW7 698 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 SRCAPQ6ZRS2 3230 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 RIMBP2O15034 1052 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 PRPF6O94906 941 aaKnown RBP13.43□□□□□ -0.26
CLIP3-201ENST00000360535 MYL1P05976 194 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 PRPHP41219 470 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 MAN2A1Q16706 1144 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 TTBK2Q6IQ55 1244 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 LSM14BQ9BX40 385 aaKnown RBP13.43□□□□□ -0.26
CLIP3-201ENST00000360535 FGFBP2Q9BYJ0 223 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 MKRN1Q9UHC7 482 aaKnown RBP13.43□□□□□ -0.26
CLIP3-201ENST00000360535 ABCA3Q99758 1704 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 GALNT17Q6IS24 598 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 KLHL7Q8IXQ5 586 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 TSEN2Q8NCE0 465 aaKnown RBP13.43□□□□□ -0.26
CLIP3-201ENST00000360535 RPGRIP1Q96KN7 1286 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 TSG101Q99816 390 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 FAM184BQ9ULE4 1060 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 HYOU1Q9Y4L1 999 aa13.43□□□□□ -0.26
CLIP3-201ENST00000360535 E9PMD0 336 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 C6orf229H3BNL8 230 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 LDHCP07864 332 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ADCY7P51828 1080 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 GNGT1P63211 74 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 GSTO1P78417 241 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 GUCY2DQ02846 1103 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 EHHADHQ08426 723 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ECM1Q16610 540 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 MFSD14BQ5SR56 506 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 CENPPQ6IPU0 288 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 IPO4Q8TEX9 1081 aaKnown RBP13.42□□□□□ -0.26
CLIP3-201ENST00000360535 TBC1D5Q92609 795 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ARL8AQ96BM9 186 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 CUEDC2Q9H467 287 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 NFU1Q9UMS0 254 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 SIK3Q9Y2K2 1263 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ANO9A1A5B4 782 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 KRT14P02533 472 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 DPP8Q6V1X1 898 aaPredicted RBP13.42□□□□□ -0.26
CLIP3-201ENST00000360535 UNC13DQ70J99 1090 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ZNF804AQ7Z570 1209 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 MICALL1Q8N3F8 863 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 DAGLBQ8NCG7 672 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 BCAS4Q8TDM0 211 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 FAM107BQ9H098 131 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 TSPYL1Q9H0U9 437 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ZNF287Q9HBT7 754 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 ADAMTS1Q9UHI8 967 aa13.42□□□□□ -0.26
CLIP3-201ENST00000360535 KCTD1Q719H9 257 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 ARHGEF1Q92888 912 aaKnown RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 EPB41L5Q9HCM4 733 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 RTCBQ9Y3I0 505 aaKnown RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 PHLPP1O60346 1717 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 TARSL2A2RTX5 802 aaKnown RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 PALMO75781 387 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 RFC4P35249 363 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 TRADDQ15628 312 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 HERC4Q5GLZ8 1057 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 CCDC84Q86UT8 332 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 FAM133AQ8N9E0 248 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 NOX5Q96PH1 765 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 KRT12Q99456 494 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 PACSIN1Q9BY11 444 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 VIPAS39Q9H9C1 493 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 NHSL1Q5SYE7 1610 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 HSF2BPO75031 334 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 NOP2P46087 812 aaKnown RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 CARSP49589 748 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms