RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 MYO1FO00160 1098 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 UBE4AQ14139 1066 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 ZFYVE27Q5T4F4 411 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 MMS22LQ6ZRQ5 1243 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 DAAM2Q86T65 1068 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 DDX42Q86XP3 938 aaKnown RBP eCLIP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 KSR1Q8IVT5 923 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 TSEN2Q8NCE0 465 aaKnown RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 GIMAP8Q8ND71 665 aaPredicted RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 SH3RF3Q8TEJ3 882 aaPredicted RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 SLC4A9Q96Q91 983 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 UBXN6Q9BZV1 441 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 VIPAS39Q9H9C1 493 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 ATP8A2Q9NTI2 1148 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 ARHGAP20Q9P2F6 1191 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 MRC1P22897 1456 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 LMO7Q8WWI1 1683 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 ERVV-1B6SEH8 477 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 EPHB6O15197 1021 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 MAP2K2P36507 400 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 E2F5Q15329 346 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 PAPD7Q5XG87 772 aaKnown RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 CCDC91Q7Z6B0 441 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 TMEM47Q9BQJ4 181 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 RIOK1Q9BRS2 568 aaKnown RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 PLAAQ9Y263 795 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 TNS3Q68CZ2 1445 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 FRMD3A2A2Y4 597 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 TARSL2A2RTX5 802 aaKnown RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 KRIT1O00522 736 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 RHOBTB3O94955 611 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 TDP2O95551 362 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 SLC16A2P36021 539 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 ACTN3Q08043 901 aaPredicted RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 FAM26FQ5R3K3 315 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 PEX26Q7Z412 305 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 ZNF34Q8IZ26 560 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 DDX12PQ92771 950 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 DUSP9Q99956 384 aaKnown RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 SH2D4AQ9H788 454 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 PANK4Q9NVE7 773 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.24□□□□□ -1.25
CSDE1-203ENST00000358528 PCDHB13Q9Y5F0 798 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 PLEKHG2Q9H7P9 1386 aa7.24□□□□□ -1.25
CSDE1-203ENST00000358528 EIF3HO15372 352 aaKnown RBP eCLIP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 LDHCP07864 332 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 ADCY7P51828 1080 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 RBM5P52756 815 aaKnown RBP eCLIP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 RCAN1P53805 252 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 CLEC10AQ8IUN9 316 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 MARCH10Q8NA82 808 aaPredicted RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 U2AF1L4Q8WU68 220 aaKnown RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 NSUN4Q96CB9 384 aaKnown RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 DDX47Q9H0S4 455 aaKnown RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 KIAA1024Q9UPX6 916 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 C5P01031 1676 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 MYMKA6NI61 221 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 LRRC10BA6NIK2 292 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 MEIS1O00470 390 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 FAM153BP0C7A2 387 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 SF3B2Q13435 895 aaKnown RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 ADAM9Q13443 819 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 FAM153CQ494X1 144 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 EMBQ6PCB8 327 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 GPBP1Q86WP2 473 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 CCDC65Q8IXS2 484 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 ARFGAP2Q8N6H7 521 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 RDH13Q8NBN7 331 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 RNPC3Q96LT9 517 aaKnown RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 FAM153AQ9UHL3 310 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 RIMBP2O15034 1052 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 CETN3O15182 167 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 NKRFO15226 690 aaKnown RBP eCLIP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 KCNB1Q14721 858 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 NAALADL2Q58DX5 795 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 MTMR8Q96EF0 704 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 PCDHA12Q9UN75 941 aa7.23□□□□□ -1.25
CSDE1-203ENST00000358528 NOVA2Q9UNW9 492 aaKnown RBP7.23□□□□□ -1.25
CSDE1-203ENST00000358528 NPHP3-ACAD11A0A0J9YXS1 232 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 BUB1BO60566 1050 aaPredicted RBP7.22□□□□□ -1.25
CSDE1-203ENST00000358528 GLI1P08151 1106 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 VIMP08670 466 aaKnown RBP7.22□□□□□ -1.25
CSDE1-203ENST00000358528 NF2P35240 595 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 PPP1R2P41236 205 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 CYP4A11Q02928 519 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 FUT2Q10981 343 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 FAM83BQ5T0W9 1011 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 MCTP2Q6DN12 878 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 C3orf67Q6ZVT6 689 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 PNMA8AQ86V59 439 aaPredicted RBP7.22□□□□□ -1.25
CSDE1-203ENST00000358528 CREG2Q8IUH2 290 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 GLIS3Q8NEA6 775 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 SEMA6BQ9H3T3 888 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 SRP68Q9UHB9 627 aaKnown RBP7.22□□□□□ -1.25
CSDE1-203ENST00000358528 BAIAP2L1Q9UHR4 511 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 ATP8A1Q9Y2Q0 1164 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 N4BP2Q86UW6 1770 aaPredicted RBP7.22□□□□□ -1.25
CSDE1-203ENST00000358528 RGPD5Q99666 1765 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 ZNF804BA4D1E1 1349 aa7.22□□□□□ -1.25
CSDE1-203ENST00000358528 USP17L5A8MUK1 530 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms