RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 Q9H521 79 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 DDX25Q9UHL0 483 aaKnown RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 DENND3A2RUS2 1198 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 IMPDH2P12268 514 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 SLC9A1P19634 815 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 PSMC1P62191 440 aaKnown RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 ZBTB17Q13105 803 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 ARMCX5Q6P1M9 558 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 PLEKHM3Q6ZWE6 761 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 HDXQ7Z353 690 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 C16orf62Q7Z3J2 963 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 SECISBP2LQ93073 1101 aaKnown RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 IFIH1Q9BYX4 1025 aaKnown RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 PPIEQ9UNP9 301 aaKnown RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 GOLGA8SH3BPF8 625 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 SLC9C1Q4G0N8 1177 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 SFMBT2Q5VUG0 894 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 CDKL2Q92772 493 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 HSPD1P10809 573 aaKnown RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 NNMTP40261 264 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 CDO1Q16878 200 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 E4F1Q66K89 784 aaPredicted RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 RCSD1Q6JBY9 416 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 FAM117BQ6P1L5 589 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 DNAJC10Q8IXB1 793 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 IGSF22Q8N9C0 903 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 DCAF5Q96JK2 942 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 FAM49AQ9H0Q0 323 aaPredicted RBP10.59□□□□□ -0.71
CHD3-202ENST00000358181 TAB2Q9NYJ8 693 aa10.59□□□□□ -0.71
CHD3-202ENST00000358181 DNAJC6O75061 913 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 CACNB2Q08289 660 aaPredicted RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 NFX1Q12986 1120 aaKnown RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 CC2D1AQ6P1N0 951 aaPredicted RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 TADA2BQ86TJ2 420 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 SPICE1Q8N0Z3 855 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 PHF21AQ96BD5 680 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 IFT43Q96FT9 208 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 SNX2O60749 519 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 RNF168Q8IYW5 571 aaPredicted RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 ARMC2Q8NEN0 867 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 DCTN3O75935 186 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 RFWD2Q8NHY2 731 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 LRWD1Q9UFC0 647 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 HYOU1Q9Y4L1 999 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 GPBP1Q86WP2 473 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 EFCAB13Q8IY85 973 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 SIX6OS1Q8N1H7 587 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 FLT4P35916 1363 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 SYNRGQ9UMZ2 1314 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 PI4K2BG5E9Z4 385 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 CPP00450 1065 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 CABP7Q86V35 215 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 PPM1KQ8N3J5 372 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 HSPH1Q92598 858 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 SUCLG2Q96I99 432 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 FAM207AQ9NSI2 230 aaPredicted RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 E2F6O75461 281 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 UPP2O95045 317 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 FOSP01100 380 aaPredicted RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 TFDP1Q14186 410 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 ENOX1Q8TC92 643 aaKnown RBP10.58□□□□□ -0.72
CHD3-202ENST00000358181 ZNF148Q9UQR1 794 aa10.58□□□□□ -0.72
CHD3-202ENST00000358181 NSD2O96028 1365 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 POLR2DO15514 142 aaKnown RBP10.57□□□□□ -0.72
CHD3-202ENST00000358181 RRAGAQ7L523 313 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 ASZ1Q8WWH4 475 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 NUDCD1Q96RS6 583 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 NRBP2Q9NSY0 501 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 STX18Q9P2W9 335 aaKnown RBP10.57□□□□□ -0.72
CHD3-202ENST00000358181 TRAF3IP3Q9Y228 551 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 RGS16O15492 202 aaPredicted RBP10.57□□□□□ -0.72
CHD3-202ENST00000358181 NAA35Q5VZE5 725 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 CYP26C1Q6V0L0 522 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 ANKS3Q6ZW76 656 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 CDC37L1Q7L3B6 337 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 IP6K1Q92551 441 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 EPS15L1Q9UBC2 864 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 TSPOAP1O95153 1857 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 SPDYE5A6NIY4 337 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 SPDYE7PQ495Y7 208 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 ALFQ53S48 1182 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 MCF2L2Q86YR7 1114 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 PLEKHM2Q8IWE5 1019 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 LINS1Q8NG48 757 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 GTF2A1LQ9UNN4 478 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 BICRAQ9NZM4 1560 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 POLR2MP0CAP2 368 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 ALDH1B1P30837 517 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 NAPGQ99747 312 aaPredicted RBP10.57□□□□□ -0.72
CHD3-202ENST00000358181 LRRC4Q9HBW1 653 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 HPCAL4Q9UM19 191 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 PFDN1O60925 122 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 ATF2P15336 505 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 CCNA1P78396 465 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 ART3Q13508 389 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 TRIM45Q9H8W5 580 aaPredicted RBP10.57□□□□□ -0.72
CHD3-202ENST00000358181 NDFIP2Q9NV92 336 aa10.57□□□□□ -0.72
CHD3-202ENST00000358181 NXF1Q9UBU9 619 aaKnown RBP10.57□□□□□ -0.72
CHD3-202ENST00000358181 KRT17Q04695 432 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms