RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 ERVK-24P63145 666 aa20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 NCAPG2Q86XI2 1143 aa20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 GTF3C2Q8WUA4 911 aaPredicted RBP20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 UIMC1Q96RL1 719 aa20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 RMDN3Q96TC7 470 aa20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 FBXO40Q9UH90 709 aa20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 ABT1Q9ULW3 272 aaKnown RBP20.52■□□□□ 0.88
SMARCD3-202ENST00000356800 MANSC4A6NHS7 340 aaPredicted RBP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 SLC25A27O95847 323 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 EIF2AK2P19525 551 aaKnown RBP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 CDC25AP30304 524 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 ZNF76P36508 570 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 TECP42680 631 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 FXR2P51116 673 aaKnown RBP eCLIP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 PGM5Q15124 567 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 IGSF22Q8N9C0 903 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 SMCR8Q8TEV9 937 aaPredicted RBP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 PANK2Q9BZ23 570 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 IGF2BP3O00425 579 aaKnown RBP eCLIP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 MRPS9P82933 396 aaKnown RBP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 CEP55Q53EZ4 464 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 PCNX4Q63HM2 1172 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 ZNF784Q8NCA9 323 aaPredicted RBP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 TIGD1Q96MW7 591 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 PDCD2LQ9BRP1 358 aa20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 TTC12Q9H892 705 aaPredicted RBP20.51■□□□□ 0.87
SMARCD3-202ENST00000356800 MSH4O15457 936 aa20.5■□□□□ 0.87
SMARCD3-202ENST00000356800 POLR2DO15514 142 aaKnown RBP20.5■□□□□ 0.87
SMARCD3-202ENST00000356800 LONRF3Q496Y0 759 aa20.5■□□□□ 0.87
SMARCD3-202ENST00000356800 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.5■□□□□ 0.87
SMARCD3-202ENST00000356800 PDILTQ8N807 584 aa20.5■□□□□ 0.87
SMARCD3-202ENST00000356800 MEIS1O00470 390 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 TBX3O15119 743 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 ITGB5P18084 799 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 FSTL1Q12841 308 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 ARHGEF16Q5VV41 709 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 PLA2G4DQ86XP0 818 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 ANKRD35Q8N283 1001 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 ANKRD13CQ8N6S4 541 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 HHIPL1Q96JK4 782 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 AK8Q96MA6 479 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 PARK7Q99497 189 aaKnown RBP20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 MXRA8Q9BRK3 442 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 FUCA2Q9BTY2 467 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 PORCNQ9H237 461 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 MORF4L1Q9UBU8 362 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 ASTN1O14525 1302 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 PFASO15067 1338 aa20.49■□□□□ 0.87
SMARCD3-202ENST00000356800 KIAA1217Q5T5P2 1943 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 YY1P25490 414 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 COPB2P35606 906 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 GCLCP48506 637 aaPredicted RBP20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 CNTN2Q02246 1040 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 L1TD1Q5T7N2 865 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 SLFN12Q8IYM2 578 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 GPRC5AQ8NFJ5 357 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 CCDC102AQ96A19 550 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 UBIAD1Q9Y5Z9 338 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 POTEMA6NI47 508 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 ACTN4O43707 911 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 MARCH6O60337 910 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 ARP10275 920 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 DEKP35659 375 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 MRE11P49959 708 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 PDIA5Q14554 519 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 TMEM266Q2M3C6 531 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 KRBA2Q6ZNG9 492 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 CKAP2LQ8IYA6 745 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 SHCBP1Q8NEM2 672 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 NSUN6Q8TEA1 469 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 FAM20AQ96MK3 541 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 MMTAG2Q9BU76 263 aaKnown RBP20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 CCSER1Q9C0I3 900 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 TSPY26PQ9H489 355 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 SERTAD1Q9UHV2 236 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 PCDHA12Q9UN75 941 aa20.48■□□□□ 0.87
SMARCD3-202ENST00000356800 PLXNB2O15031 1838 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 MYCLP12524 364 aaPredicted RBP20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 SPIRE1Q08AE8 756 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 E2F4Q16254 413 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 ZIC5Q96T25 663 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 MROH8Q9H579 483 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 EFCC1Q9HA90 598 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 LRWD1Q9UFC0 647 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 ADGRA2Q96PE1 1338 aa20.47■□□□□ 0.87
SMARCD3-202ENST00000356800 NR3C2P08235 984 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 KARSQ15046 597 aaKnown RBP20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 NIPA1Q7RTP0 329 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 VSIG10LQ86VR7 867 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 IFNL1Q8IU54 200 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 ELOA2Q8IYF1 753 aaPredicted RBP20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 FAM133AQ8N9E0 248 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 SLC5A5Q92911 643 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 DHX58Q96C10 678 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 SDF4Q9BRK5 362 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 WDR11Q9BZH6 1224 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 GRPEL1Q9HAV7 217 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 ZCCHC17Q9NP64 241 aaKnown RBP20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 LRRC37A2A6NM11 1700 aa20.46■□□□□ 0.87
SMARCD3-202ENST00000356800 SOWAHBA6NEL2 793 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms