RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 OPLAHO14841 1288 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 POLR2DO15514 142 aaKnown RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ASAP2O43150 1006 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 PRC1O43663 620 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ACTN4O43707 911 aaKnown RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ORC4O43929 436 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ABL1P00519 1130 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 LINGO3P0C6S8 592 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 GNAT1P11488 350 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ATP2A2P16615 1042 aaKnown RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 CTCFP49711 727 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ATP11AP98196 1134 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 FSTL1Q12841 308 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 CDC37Q16543 378 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ZNF827Q17R98 1081 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ZMYM1Q5SVZ6 1142 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 THEMIS2Q5TEJ8 643 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 RALYLQ86SE5 291 aaKnown RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 ZNF513Q8N8E2 541 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 GORASP1Q9BQQ3 440 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 TRIM4Q9C037 500 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 VCXQ9H320 206 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 RMND1Q9NWS8 449 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 TLR7Q9NYK1 1049 aaKnown RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 SAMD15Q9P1V8 674 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 GRM8O00222 908 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 DDX58O95786 925 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 BMP15O95972 392 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 EEF1GP26641 437 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 HPDP32754 393 aaPredicted RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CCT6AP40227 531 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 RBM5P52756 815 aaKnown RBP eCLIP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 TNNC1P63316 161 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 MXRA7P84157 204 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SFSWAPQ12872 951 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CUL1Q13616 776 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SETDB1Q15047 1291 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SESTD1Q86VW0 696 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 NCAPG2Q86XI2 1143 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 LINS1Q8NG48 757 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 NCOA7Q8NI08 942 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 OXER1Q8TDS5 423 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SMCR8Q8TEV9 937 aaPredicted RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CHMP6Q96FZ7 201 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 TRAPPC9Q96Q05 1148 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 MED15Q96RN5 788 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 MMTAG2Q9BU76 263 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 DBF4Q9UBU7 674 aaPredicted RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 TRIM10Q9UDY6 481 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 PLAAQ9Y263 795 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SRPRBQ9Y5M8 271 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 PHRF1Q9P1Y6 1649 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SPDYE3A6NKU9 549 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 KCNJ18B7U540 433 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 ZNF185O15231 689 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 FOXN1O15353 648 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CREB3O43889 395 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 TBC1D12O60347 775 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 DIAPH2O60879 1101 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 HEXIM1O94992 359 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CLTAP09496 248 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 GBP1P32455 592 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 UBXN1Q04323 297 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 PAK1Q13153 545 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 KCNJ12Q14500 433 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 DDB1Q16531 1140 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 ODF2Q5BJF6 829 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 TCP11X2Q5H9J9 407 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 SPDYCQ5MJ68 293 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 KLHL10Q6JEL2 608 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 PNMA8AQ86V59 439 aaPredicted RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 NOSTRINQ8IVI9 506 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 FBF1Q8TES7 1133 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 NUDT16Q96DE0 195 aaKnown RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CRISPLD2Q9H0B8 497 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 CHPF2Q9P2E5 772 aa8.95□□□□□ -0.98
ATG4A-201ENST00000343524 FBXO2Q9UK22 296 aaPredicted RBP8.95□□□□□ -0.98
ATG4A-201ENST00000343524 LMO7Q8WWI1 1683 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 NFAT5O94916 1531 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 LGALS16A8MUM7 142 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 HSPD1P10809 573 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 NQO1P15559 274 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 EIF3BP55884 814 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 NLRP5P59047 1200 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 ZC3H6P61129 1189 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 TAF11Q15544 211 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 TNNI3KQ59H18 835 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 ANKRD20A2Q5SQ80 823 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 ANKRD20A1Q5TYW2 823 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 HHATQ5VTY9 493 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 ANKRD20A3Q5VUR7 823 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 KSR2Q6VAB6 950 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 CROCCP2Q86T23 111 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 MARCH10Q8NA82 808 aaPredicted RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 CFAP61Q8NHU2 1237 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 AGAP11Q8TF27 550 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 LZICQ8WZA0 190 aa8.94□□□□□ -0.98
ATG4A-201ENST00000343524 NAF1Q96HR8 494 aaKnown RBP8.94□□□□□ -0.98
ATG4A-201ENST00000343524 CHP1Q99653 195 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms