RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 ADGRL3Q9HAR2 1447 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 MAP2K2P36507 400 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 ARHGAP25P42331 645 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 EXOC3L4Q17RC7 722 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 ARL6IP4Q66PJ3 421 aaKnown RBP13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 BRINP3Q76B58 766 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 CLEC10AQ8IUN9 316 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 SPATA4Q8NEY3 305 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 STK38LQ9Y2H1 464 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 PCDHA1Q9Y5I3 950 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 CLTAP09496 248 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 HAUS3Q68CZ6 603 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 FOXR1Q6PIV2 292 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 CAPN12Q6ZSI9 719 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 RETREG2Q8NC44 543 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 OSBPL9Q96SU4 736 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 AMFRQ9UKV5 643 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 PTPN22Q9Y2R2 807 aa13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 RIMS1Q86UR5 1692 aaKnown RBP13.65□□□□□ -0.22
SNRNP48-201ENST00000342415 LMTK3Q96Q04 1460 aa13.65□□□□□ -0.23
SNRNP48-201ENST00000342415 RPSAP08865 295 aaKnown RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 KRT5P13647 590 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 USP40Q9NVE5 1235 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 A0A087WUV0 522 aaPredicted RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 PLTPP55058 493 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 GUCY1A3Q02108 690 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 FAM84BQ96KN1 310 aaPredicted RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 LZTS2Q9BRK4 669 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 VEZTQ9HBM0 779 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 TSKSQ9UJT2 592 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 NOVA2Q9UNW9 492 aaKnown RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 COL4A3BPQ9Y5P4 624 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 TECPR2O15040 1411 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 GFPT2O94808 682 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 TDP2O95551 362 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 NR1D1P20393 614 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 MAGEA9P43362 315 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 PRM3Q9NNZ6 103 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 LCMT1Q9UIC8 334 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 BCS1LQ9Y276 419 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 XDHP47989 1333 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 NEURL4Q96JN8 1562 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 POTEJP0CG39 1038 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 HARSP12081 509 aaKnown RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 EZH2Q15910 746 aaKnown RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 EFCAB13Q8IY85 973 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 FAM212AQ96EL1 285 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 LIMA1Q9UHB6 759 aaKnown RBP13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 L1RE1Q9UN81 338 aa13.64□□□□□ -0.23
SNRNP48-201ENST00000342415 KNDC1Q76NI1 1749 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 FAM196BA6NMK8 535 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 ERVV-1B6SEH8 477 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 E9PMD0 336 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 PRPF6O94906 941 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 VEGFAP15692 232 aaPredicted RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CPXCR1Q8N123 301 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 ADSSL1Q8N142 457 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 ANKZF1Q9H8Y5 726 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 SERPINA10Q9UK55 444 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CD2APQ9Y5K6 639 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CCDC169A6NNP5 214 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L5A8MUK1 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 RGS16O15492 202 aaPredicted RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 TOM1O60784 492 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 DHX9Q08211 1270 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CCDC93Q567U6 631 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 RBM26Q5T8P6 1007 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 SEL1L2Q5TEA6 688 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 TADA2BQ86TJ2 420 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 HOOK3Q86VS8 718 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 KIAA0825Q8IV33 1275 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CACNA2D3Q8IZS8 1091 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 DDX47Q9H0S4 455 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 DNAJC17Q9NVM6 304 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L15C9J2P7 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L13C9JLJ4 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L11C9JVI0 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L18D6R9N7 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L22D6RA61 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L17D6RBQ6 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L19D6RCP7 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L20D6RJB6 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 KCNQ2O43526 872 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 ZNF18P17022 549 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L24Q0WX57 530 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 FBXW10Q5XX13 1052 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USP17L6PQ6QN14 398 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 BRIP1Q9BX63 1249 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 NSRP1Q9H0G5 558 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CAPN11Q9UMQ6 739 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 USTQ9Y2C2 406 aa13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 THRAP3Q9Y2W1 955 aaKnown RBP13.63□□□□□ -0.23
SNRNP48-201ENST00000342415 CALUO43852 315 aaPredicted RBP13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 PHLDB2Q86SQ0 1253 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 TRIM9Q9C026 710 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 NT5C3AQ9H0P0 336 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 HOMER2Q9NSB8 354 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 EMILIN3Q9NT22 766 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 CDK8P49336 464 aa13.62□□□□□ -0.23
SNRNP48-201ENST00000342415 TROAPQ12815 778 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms