RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 XBP1P17861 261 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 HLTFQ14527 1009 aaKnown RBP eCLIP20.35■□□□□ 0.85
SMPD1-201ENST00000342245 TMEM67Q5HYA8 995 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 ZNF317Q96PQ6 595 aaPredicted RBP20.35■□□□□ 0.85
SMPD1-201ENST00000342245 EHD2Q9NZN4 543 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 COBLO75128 1261 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 ABL2P42684 1182 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 MAGEA1P43355 309 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 PDIA6Q15084 440 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 TAF11Q15544 211 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 PDXDC2PQ6P474 469 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 RBM12BQ8IXT5 1001 aaKnown RBP20.35■□□□□ 0.85
SMPD1-201ENST00000342245 FAM81AQ8TBF8 368 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 PCMTD1Q96MG8 357 aaPredicted RBP20.35■□□□□ 0.85
SMPD1-201ENST00000342245 TUBGCP2Q9BSJ2 902 aa20.35■□□□□ 0.85
SMPD1-201ENST00000342245 LUC7LQ9NQ29 371 aaKnown RBP20.35■□□□□ 0.85
SMPD1-201ENST00000342245 PSMA7O14818 248 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 MAGOHP61326 146 aaKnown RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 MXRA7P84157 204 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 DYNC1I2Q13409 638 aaKnown RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 APBB1IPQ7Z5R6 666 aaPredicted RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 MAGOHBQ96A72 148 aaKnown RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 PSMB7Q99436 277 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 GORASP1Q9BQQ3 440 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 CCDC9Q9Y3X0 531 aaKnown RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 ZSCAN5CA6NGD5 496 aaPredicted RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 RNMTO43148 476 aaKnown RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 AKR1B10O60218 316 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 CTNND1O60716 968 aaKnown RBP20.34■□□□□ 0.85
SMPD1-201ENST00000342245 ALDH3A1P30838 453 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 RCAN1P53805 252 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 NR5A1Q13285 461 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 AMOTQ4VCS5 1084 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 TLCD1Q96CP7 247 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 EPAS1Q99814 870 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 SLIT3O75094 1523 aa20.34■□□□□ 0.85
SMPD1-201ENST00000342245 GPAA1O43292 621 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 RNF8O76064 485 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 UAP1Q16222 522 aaPredicted RBP20.33■□□□□ 0.85
SMPD1-201ENST00000342245 ATG9AQ7Z3C6 839 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 HOOK3Q86VS8 718 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 IP6K1Q92551 441 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 TRIM47Q96LD4 638 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 BLZF1Q9H2G9 400 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 CCDC134Q9H6E4 229 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 CTNNAL1Q9UBT7 734 aa20.33■□□□□ 0.85
SMPD1-201ENST00000342245 LMTK3Q96Q04 1460 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 GPR75-ASB3A0A0A6YYF3 556 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 TIMM10P62072 90 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 CUL3Q13618 768 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 ZNF530Q6P9A1 599 aaPredicted RBP20.33■□□□□ 0.84
SMPD1-201ENST00000342245 KRT26Q7Z3Y9 468 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 MS4A14Q96JA4 679 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 UBAC1Q9BSL1 405 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 RAB17Q9H0T7 212 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 LMCD1Q9NZU5 365 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 ASB3Q9Y575 518 aa20.33■□□□□ 0.84
SMPD1-201ENST00000342245 AFDNP55196 1824 aaKnown RBP20.32■□□□□ 0.84
SMPD1-201ENST00000342245 NCK2O43639 380 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 MYL1P05976 194 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 PYGLP06737 847 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 ALDH5A1P51649 535 aaPredicted RBP20.32■□□□□ 0.84
SMPD1-201ENST00000342245 GNPTABQ3T906 1256 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 TEKT4Q8WW24 435 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 LRRC59Q96AG4 307 aaKnown RBP20.32■□□□□ 0.84
SMPD1-201ENST00000342245 KRT23Q9C075 422 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 LRRC42Q9Y546 428 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 RAD51CO43502 376 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 CDC25CP30307 473 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 GBP1P32455 592 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 MTA1Q13330 715 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 DHTKD1Q96HY7 919 aaPredicted RBP20.32■□□□□ 0.84
SMPD1-201ENST00000342245 INCENPQ9NQS7 918 aa20.32■□□□□ 0.84
SMPD1-201ENST00000342245 EVI5O60447 810 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 RTN1Q16799 776 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 TBC1D10CQ8IV04 446 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 ZSCAN29Q8IWY8 852 aaPredicted RBP20.31■□□□□ 0.84
SMPD1-201ENST00000342245 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.31■□□□□ 0.84
SMPD1-201ENST00000342245 ARHGAP20Q9P2F6 1191 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 TMEM59LQ9UK28 342 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 BICDL2A1A5D9 508 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 BHMG1C9JSJ3 638 aaPredicted RBP20.31■□□□□ 0.84
SMPD1-201ENST00000342245 GUCY1A2P33402 732 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 PPP1R2P41236 205 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 NCALDP61601 193 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 FKBP4Q02790 459 aaKnown RBP eCLIP20.31■□□□□ 0.84
SMPD1-201ENST00000342245 LRRC23Q53EV4 343 aaPredicted RBP20.31■□□□□ 0.84
SMPD1-201ENST00000342245 TYW1BQ6NUM6 668 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 NCAPG2Q86XI2 1143 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 USP38Q8NB14 1042 aa20.31■□□□□ 0.84
SMPD1-201ENST00000342245 UBLCP1Q8WVY7 318 aaPredicted RBP20.31■□□□□ 0.84
SMPD1-201ENST00000342245 DPPA5A6NC42 116 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 CIAO1O76071 339 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 KIF4AO95239 1232 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ECHS1P30084 290 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 EIF4A3P38919 411 aaKnown RBP20.3■□□□□ 0.84
SMPD1-201ENST00000342245 KRT71Q3SY84 523 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 CROCCP2Q86T23 111 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 CRACR2BQ8N4Y2 399 aaPredicted RBP20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ZNF513Q8N8E2 541 aaPredicted RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms