RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 ZNF713Q8N859 430 aaPredicted RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 C4orf32Q8N8J7 132 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 DDX4Q9NQI0 724 aaKnown RBP12.1□□□□□ -0.47
RTN3-201ENST00000338850 PCDHA4Q9UN74 947 aa12.1□□□□□ -0.47
RTN3-201ENST00000338850 PLIN4Q96Q06 1357 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 GPR75-ASB3A0A0A6YYF3 556 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 POTEFA5A3E0 1075 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 DDTLA6NHG4 134 aaPredicted RBP12.09□□□□□ -0.47
RTN3-201ENST00000338850 USP17L12C9JPN9 530 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 USP17L21D6R901 530 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 KIF5CO60282 957 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 USP5P45974 858 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 RHBDL3P58872 404 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 MAP3K10Q02779 954 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 C17orf99Q6UX52 265 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 TOGARAM2Q6ZUX3 1019 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 TRMT44Q8IYL2 757 aaKnown RBP12.09□□□□□ -0.47
RTN3-201ENST00000338850 BLIDQ8IZY5 108 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 RETREG2Q8NC44 543 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 MSANTD4Q8NCY6 345 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 EPSTI1Q96J88 318 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 CARD6Q9BX69 1037 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 ARHGAP39Q9C0H5 1083 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 THAP9Q9H5L6 903 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 ZNF287Q9HBT7 754 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 CDC23Q9UJX2 597 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 RAB21Q9UL25 225 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 PTCH2Q9Y6C5 1203 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 V9GYY5 206 aaPredicted RBP12.09□□□□□ -0.47
RTN3-201ENST00000338850 ABCB11O95342 1321 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 ADGRA2Q96PE1 1338 aa12.09□□□□□ -0.47
RTN3-201ENST00000338850 GREB1LQ9C091 1923 aaPredicted RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 ESYT2A0FGR8 921 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 CCDC66A2RUB6 948 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 FAM205CA6NFA0 338 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 PDHXO00330 501 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 CXCL11O14625 94 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 RHOBTB3O94955 611 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 SLC34A2O95436 690 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 GYPCP04921 128 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 SLURP2P0DP57 97 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 NOVP48745 357 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 COPB1P53618 953 aaKnown RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 NLRP5P59047 1200 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 DYNLL1P63167 89 aaKnown RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 LACTBP83111 547 aaPredicted RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 PICALMQ13492 652 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 WHAMMP3Q1A5X7 153 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 C12orf60Q5U649 245 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 PRPF38BQ5VTL8 546 aaKnown RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 CYP26C1Q6V0L0 522 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 SRGAP1Q7Z6B7 1085 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 ZSCAN29Q8IWY8 852 aaPredicted RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 AMOTL1Q8IY63 956 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 GRAMD1CQ8IYS0 662 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 SCYL3Q8IZE3 742 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 PDILTQ8N807 584 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 CCDC12Q8WUD4 166 aaPredicted RBP12.08□□□□□ -0.48
RTN3-201ENST00000338850 ZNF333Q96JL9 665 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 WDR24Q96S15 920 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 SPZ1Q9BXG8 430 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 DISC1Q9NRI5 854 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 ATAD5Q96QE3 1844 aa12.08□□□□□ -0.48
RTN3-201ENST00000338850 NPM3O75607 178 aaKnown RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 RPN1P04843 607 aaKnown RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 LDHCP07864 332 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 PTPRAP18433 802 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 ADKP55263 362 aaKnown RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 CDK17Q00537 523 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 RBL2Q08999 1139 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 STIM1Q13586 685 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 KIF22Q14807 665 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 KRT31Q15323 416 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 TCP11X2Q5H9J9 407 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 FIGNQ5HY92 759 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 WWC2Q6AWC2 1192 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 GPAT2Q6NUI2 795 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 CC2D1AQ6P1N0 951 aaPredicted RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 RAD9BQ6WBX8 426 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 ADSSL1Q8N142 457 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 EHBP1Q8NDI1 1231 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 DHTKD1Q96HY7 919 aaPredicted RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 NUP58Q9BVL2 599 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 GBP3Q9H0R5 595 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 KAT14Q9H8E8 782 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 MRPL44Q9H9J2 332 aaKnown RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 ABHD10Q9NUJ1 306 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 KBTBD4Q9NVX7 518 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 CPA4Q9UI42 421 aa12.07□□□□□ -0.48
RTN3-201ENST00000338850 KIAA0100Q14667 2235 aaKnown RBP12.07□□□□□ -0.48
RTN3-201ENST00000338850 TSPY2A6NKD2 308 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 LGALS16A8MUM7 142 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 TEX33O43247 280 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 SLC26A4O43511 780 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 AFMP43652 599 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 ZNF174Q15697 407 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 SLC9C1Q4G0N8 1177 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 KRT25Q7Z3Z0 450 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 FAM114A1Q8IWE2 563 aa12.06□□□□□ -0.48
RTN3-201ENST00000338850 CMTR1Q8N1G2 835 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms