RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 CCDC65Q8IXS2 484 aa9.09□□□□□ -0.95
HPS4-201ENST00000336873 U2AF1L4Q8WU68 220 aaKnown RBP9.09□□□□□ -0.95
HPS4-201ENST00000336873 BHMT2Q9H2M3 363 aa9.09□□□□□ -0.95
HPS4-201ENST00000336873 HAUS4Q9H6D7 363 aa9.09□□□□□ -0.95
HPS4-201ENST00000336873 EPB41L5Q9HCM4 733 aa9.09□□□□□ -0.95
HPS4-201ENST00000336873 PCDHAC2Q9Y5I4 1007 aa9.09□□□□□ -0.95
HPS4-201ENST00000336873 RFX7Q2KHR2 1363 aa9.09□□□□□ -0.95
HPS4-201ENST00000336873 PPP1R12BO60237 982 aaPredicted RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 HMGB2P26583 209 aaKnown RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 CCT5P48643 541 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 LIG3P49916 1009 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 GTF2A1P52655 376 aaPredicted RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 KIF11P52732 1056 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 CKAP4Q07065 602 aaKnown RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 IL17AQ16552 155 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 CERKLQ49MI3 558 aaPredicted RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 CFAP58Q5T655 872 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 DPH6Q7L8W6 267 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 AFAP1L1Q8TED9 768 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 RBM17Q96I25 401 aaKnown RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 TRIM9Q9C026 710 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 TDRD3Q9H7E2 651 aaKnown RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 KCNQ5Q9NR82 932 aa9.09□□□□□ -0.96
HPS4-201ENST00000336873 TRPC5Q9UL62 973 aaPredicted RBP9.09□□□□□ -0.96
HPS4-201ENST00000336873 STK36Q9NRP7 1315 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SHTN1A0MZ66 631 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SLC37A4O43826 429 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 TBC1D8O95759 1140 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 CCNE1P24864 410 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SEPT2Q15019 361 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SFMBT2Q5VUG0 894 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SLFN13Q68D06 897 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 EHBP1Q8NDI1 1231 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 FAM76AQ8TAV0 307 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 PANX2Q96RD6 677 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NAA15Q9BXJ9 866 aaKnown RBP9.08□□□□□ -0.96
HPS4-201ENST00000336873 RGL1Q9NZL6 768 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 CAMTA1Q9Y6Y1 1673 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 MYMKA6NI61 221 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 RASA1P20936 1047 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NFIAQ12857 509 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NSMFQ6X4W1 530 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 VPS36Q86VN1 386 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SH2D3CQ8N5H7 860 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 ZNF579Q8NAF0 562 aaKnown RBP9.08□□□□□ -0.96
HPS4-201ENST00000336873 NOX5Q96PH1 765 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 MTRQ99707 1265 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NARFQ9UHQ1 456 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NWD2Q9ULI1 1742 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 SIPA1L3O60292 1781 aaPredicted RBP9.08□□□□□ -0.96
HPS4-201ENST00000336873 CCDC151A5D8V7 595 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 CCDC169A6NNP5 214 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 POTEB2H3BUK9 544 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NDUFAB1O14561 156 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 NKRFO15226 690 aaKnown RBP eCLIP9.08□□□□□ -0.96
HPS4-201ENST00000336873 TUBB4AP04350 444 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 PLCG2P16885 1265 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 ICA1Q05084 483 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 DAAM2Q86T65 1068 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 DGKHQ86XP1 1220 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 BCAS4Q8TDM0 211 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 COG1Q8WTW3 980 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 DNAJC17Q9NVM6 304 aaKnown RBP9.08□□□□□ -0.96
HPS4-201ENST00000336873 NFU1Q9UMS0 254 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 DNM3Q9UQ16 869 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 ECM29Q5VYK3 1845 aa9.08□□□□□ -0.96
HPS4-201ENST00000336873 RIC1Q4ADV7 1423 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 GSTTP1A0A1W2PQM5 241 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 ZSCAN5CA6NGD5 496 aaPredicted RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 H3BQF6 201 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 MDM2Q00987 491 aaPredicted RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 ZNF384Q8TF68 577 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 DYDC1Q8WWB3 177 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 SHISA4Q96DD7 197 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 PAIP2Q9BPZ3 127 aaKnown RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 LRRC1Q9BTT6 524 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 BARHL2Q9NY43 387 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 LTN1O94822 1766 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 LGALS16A8MUM7 142 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 RPS6KA4O75676 772 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 GGCXP38435 758 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 GRAPQ13588 217 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 GRAPLQ8TC17 118 aaPredicted RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 TEKT1Q969V4 418 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 L2HGDHQ9H9P8 463 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 EXOC3O60645 756 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 GFPT2O94808 682 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 MYCNP04198 464 aaPredicted RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 ZNF18P17022 549 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 SSTR3P32745 418 aaPredicted RBP9.07□□□□□ -0.96
HPS4-201ENST00000336873 MNAT1P51948 309 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 ASIC2Q16515 512 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 CAPN12Q6ZSI9 719 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 AMIGO3Q86WK7 504 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 ADGRF4Q8IZF3 695 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 HDAC7Q8WUI4 952 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 BICD1Q96G01 975 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 SELENOSQ9BQE4 189 aa9.07□□□□□ -0.96
HPS4-201ENST00000336873 PCDHA13Q9Y5I0 950 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms