RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TPRNQ4KMQ1 711 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 SPECC1Q5M775 1068 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 SH3RF1Q7Z6J0 888 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 PDCD2LQ9BRP1 358 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 MOV10L1Q9BXT6 1211 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 CUEDC2Q9H467 287 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 PXMP2Q9NR77 195 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 MORF4L1Q9UBU8 362 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 UBIAD1Q9Y5Z9 338 aa16.85■□□□□ 0.29
CCDC88C-202ENST00000334448 MANSC4A6NHS7 340 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 PDHXO00330 501 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 POLR2DO15514 142 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 SLC10A3P09131 477 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 SPIRE1Q08AE8 756 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 PRR16Q569H4 304 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 RGMBQ6NW40 437 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 NSMFQ6X4W1 530 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 IQUBQ8NA54 791 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 DNERQ8NFT8 737 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 SLC5A5Q92911 643 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 CCDC34Q96HJ3 373 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 RMDN3Q96TC7 470 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 MXRA8Q9BRK3 442 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 SDF4Q9BRK5 362 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 MROH8Q9H579 483 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 TTC12Q9H892 705 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 MAGEF1Q9HAY2 307 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 TXNRD2Q9NNW7 524 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 DISC1Q9NRI5 854 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 HOOK1Q9UJC3 728 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 STK24Q9Y6E0 443 aa16.84■□□□□ 0.29
CCDC88C-202ENST00000334448 MSH4O15457 936 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 STAM2O75886 525 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 UBA7P41226 1012 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 TXKP42681 527 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 MDM2Q00987 491 aaPredicted RBP16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 PLS1Q14651 629 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 PGM5Q15124 567 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 CAMK4Q16566 473 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 HYIQ5T013 277 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 CNNM3Q8NE01 707 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 IL31RAQ8NI17 732 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 NSUN6Q8TEA1 469 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 TAAR1Q96RJ0 339 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 PARK7Q99497 189 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 MMTAG2Q9BU76 263 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 KIAA1468Q9P260 1216 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 TUBE1Q9UJT0 475 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 VAV3Q9UKW4 847 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 PCDHA12Q9UN75 941 aa16.83■□□□□ 0.28
CCDC88C-202ENST00000334448 LOC102724159A0A0B4J2E5 919 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 TOMM70O94826 608 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 CCDC192P0DO97 292 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 ITGB5P18084 799 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 ZNF76P36508 570 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 TECP42680 631 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 ERVK-9P63128 1117 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 ERVK-24P63145 666 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 MRPS9P82933 396 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 PWP2Q15269 919 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 NT5DC1Q5TFE4 455 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 PDXDC2PQ6P474 469 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 B3GNT9Q6UX72 402 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 CABP7Q86V35 215 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 VSIG10LQ86VR7 867 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 GAS2L3Q86XJ1 694 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 PLA2G4DQ86XP0 818 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 KCTD17Q8N5Z5 321 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 CYP2W1Q8TAV3 490 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 SPATA20Q8TB22 786 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 IWS1Q96ST2 819 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 RIT2Q99578 217 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 PTPN18Q99952 460 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 JADE2Q9NQC1 790 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 LRWD1Q9UFC0 647 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 CCDC39Q9UFE4 941 aa16.82■□□□□ 0.28
CCDC88C-202ENST00000334448 ADGRA2Q96PE1 1338 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 PSMD10O75832 226 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 CAVIN2O95810 425 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 MYL1P05976 194 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 ERCC3P19447 782 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 EDNRBP24530 442 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 ZNF157P51786 506 aaPredicted RBP16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 INHBEP58166 350 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 CCNA1P78396 465 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 FSTL1Q12841 308 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 NAALADL2Q58DX5 795 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 FAM43AQ8N2R8 423 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 FAM133AQ8N9E0 248 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 CCDC102AQ96A19 550 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 INPP4AQ96PE3 977 aaPredicted RBP16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 PAGR1Q9BTK6 254 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 TSPY26PQ9H489 355 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 STK17AQ9UEE5 414 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 SERTAD1Q9UHV2 236 aa16.81■□□□□ 0.28
CCDC88C-202ENST00000334448 KDM3AQ9Y4C1 1321 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 DNAJC25-GNG10A0A024R161 153 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 PP2D1A8MPX8 630 aa16.8■□□□□ 0.28
CCDC88C-202ENST00000334448 FAM155AB1AL88 458 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms