RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 KRT71Q3SY84 523 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 SPDYE2Q495Y8 402 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CIAPIN1Q6FI81 312 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 MIS18BP1Q6P0N0 1132 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 MYRIPQ8NFW9 859 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ARHGEF1Q92888 912 aaKnown RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 SAMSN1Q9NSI8 373 aaKnown RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 ANAPC4Q9UJX5 808 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CD2APQ9Y5K6 639 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 PPP6R2O75170 966 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 ARPP19P56211 112 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 TTC19Q6DKK2 380 aaPredicted RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 PIGOQ8TEQ8 1089 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 AFG3L2Q9Y4W6 797 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 GKAP1Q5VSY0 366 aaPredicted RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 YWHAEP62258 255 aaKnown RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 TFAMQ00059 246 aaKnown RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 SUPT20HL1Q3ZLR7 823 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 FYB2Q5VWT5 728 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 SCARA5Q6ZMJ2 495 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 RFX1P22670 979 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 MASTLQ96GX5 879 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 NUCKS1Q9H1E3 243 aaKnown RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 NXF1Q9UBU9 619 aaKnown RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 COL15A1P39059 1388 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 FAM83BQ5T0W9 1011 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 AK9Q5TCS8 1911 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 TLR3O15455 904 aaKnown RBP11.12□□□□□ -0.63
CHD3-201ENST00000330494 MAP2K2P36507 400 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 ATP1A2P50993 1020 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 C7orf31Q8N865 590 aa11.12□□□□□ -0.63
CHD3-201ENST00000330494 ARHGEF2Q92974 986 aaKnown RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 NLRP4Q96MN2 994 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 EPN1Q9Y6I3 576 aaPredicted RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 CROCC2H7BZ55 1655 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 ECE2O60344 883 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 TRIM58Q8NG06 486 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 NBPF3Q9H094 633 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 GFPT2O94808 682 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 CD58P19256 250 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 ARMC9Q7Z3E5 817 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 FAM133AQ8N9E0 248 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 ZNF668Q96K58 619 aaPredicted RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 A2ML1A8K2U0 1454 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 CPDO75976 1380 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 RPS6KA4O75676 772 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 FOSP01100 380 aaPredicted RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 NECTIN1Q15223 517 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 GOLGA5Q8TBA6 731 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 ZNF653Q96CK0 615 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 STRBPQ96SI9 672 aaKnown RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 GOLGA8SH3BPF8 625 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 AP5M1Q9H0R1 490 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 RAVER2Q9HCJ3 691 aaKnown RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 HESX1Q9UBX0 185 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 RNF17Q9BXT8 1623 aaKnown RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 SLC4A1P02730 911 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 EN1Q05925 392 aaPredicted RBP11.11□□□□□ -0.63
CHD3-201ENST00000330494 LINC00301Q8NCQ3 95 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 RILPQ96NA2 401 aa11.11□□□□□ -0.63
CHD3-201ENST00000330494 LAMC1P11047 1609 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 GIPC1O14908 333 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 OATP04181 439 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 CTNNA1P35221 906 aaKnown RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 MCTP2Q6DN12 878 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 FAM186BQ8IYM0 893 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 SLC7A3Q8WY07 619 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 P2RX5Q93086 422 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 FEZ2Q9UHY8 353 aaPredicted RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 SCAF8Q9UPN6 1271 aaKnown RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 PLA2G4BP0C869 781 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 DYNLT1P63172 113 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 TAOK1Q7L7X3 1001 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 COA1Q9GZY4 146 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 BCL2L12Q9HB09 334 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 UBE2TQ9NPD8 197 aaPredicted RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 FAM114A2Q9NRY5 505 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 TMEM260Q9NX78 707 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 SOWAHDA6NJG2 315 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 PCK1P35558 622 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 PSMC2P35998 433 aaKnown RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 USP14P54578 494 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 GPSM2P81274 684 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 SLC35F6Q8N357 371 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 TRIML1Q8N9V2 468 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 TSKSQ9UJT2 592 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 TUBB2AQ13885 445 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 HADHQ16836 314 aaKnown RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 ANKRD36BP1Q96IX9 119 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 PPP1R13BQ96KQ4 1090 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 TUBB2BQ9BVA1 445 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 PPP1R12CQ9BZL4 782 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 RAB17Q9H0T7 212 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 HYOU1Q9Y4L1 999 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 CYP19A1P11511 503 aaPredicted RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 BIRC2Q13490 618 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 ZNF658Q5TYW1 1059 aaPredicted RBP11.1□□□□□ -0.63
CHD3-201ENST00000330494 CCDC13Q8IYE1 715 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 STMN2Q93045 179 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 POLR3EQ9NVU0 708 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms