RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 TTLL6Q8N841 843 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 RETREG2Q8NC44 543 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 NUP58Q9BVL2 599 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 LRWD1Q9UFC0 647 aa17.91■□□□□ 0.46
USHBP1-202ENST00000324554 RCCD1A6NED2 376 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 SRGAP2O75044 1071 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 TDP2O95551 362 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 CRKP46108 304 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 MTIF2P46199 727 aaKnown RBP17.9■□□□□ 0.46
USHBP1-202ENST00000324554 ADCY7P51828 1080 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 GPS2Q13227 327 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 CASP8Q14790 479 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 APOBEC3HQ6NTF7 200 aaKnown RBP17.9■□□□□ 0.46
USHBP1-202ENST00000324554 SV2BQ7L1I2 683 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 ZSCAN29Q8IWY8 852 aaPredicted RBP17.9■□□□□ 0.46
USHBP1-202ENST00000324554 TEKT1Q969V4 418 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 EXOC4Q96A65 974 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 PNMA5Q96PV4 448 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 SEMA6BQ9H3T3 888 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 ZNF277Q9NRM2 450 aaPredicted RBP17.9■□□□□ 0.46
USHBP1-202ENST00000324554 IGKV6D-41A0A0C4DH26 115 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 YDJCA8MPS7 323 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 EIF6P56537 245 aaKnown RBP17.9■□□□□ 0.46
USHBP1-202ENST00000324554 DACT2Q5SW24 774 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 CLEC10AQ8IUN9 316 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 NOC4LQ9BVI4 516 aaKnown RBP17.9■□□□□ 0.46
USHBP1-202ENST00000324554 LACRTQ9GZZ8 138 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 SLC39A2Q9NP94 309 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 VPS18Q9P253 973 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 STK17AQ9UEE5 414 aa17.9■□□□□ 0.46
USHBP1-202ENST00000324554 MYMKA6NI61 221 aa17.89■□□□□ 0.45
USHBP1-202ENST00000324554 MSL3Q8N5Y2 521 aaKnown RBP17.89■□□□□ 0.45
USHBP1-202ENST00000324554 MMS19Q96T76 1030 aa17.89■□□□□ 0.45
USHBP1-202ENST00000324554 RNF216Q9NWF9 866 aaPredicted RBP17.89■□□□□ 0.45
USHBP1-202ENST00000324554 LMAN1P49257 510 aa17.89■□□□□ 0.45
USHBP1-202ENST00000324554 ZBED6P86452 979 aa17.89■□□□□ 0.45
USHBP1-202ENST00000324554 CENPPQ6IPU0 288 aa17.89■□□□□ 0.45
USHBP1-202ENST00000324554 LARP4BQ92615 738 aaKnown RBP17.89■□□□□ 0.45
USHBP1-202ENST00000324554 POTEMA6NI47 508 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 FAM196BA6NMK8 535 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 LRRIQ3A6PVS8 624 aaPredicted RBP17.88■□□□□ 0.45
USHBP1-202ENST00000324554 WDR93Q6P2C0 686 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 ZNF662Q6ZS27 426 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 UNC13DQ70J99 1090 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 ERGIC2Q96RQ1 377 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 GPCPD1Q9NPB8 672 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 PSD3Q9NYI0 1048 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 RAD17O75943 681 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 KRT83P78385 493 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 TMEM266Q2M3C6 531 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 STRIP1Q5VSL9 837 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 PAPD7Q5XG87 772 aaKnown RBP17.88■□□□□ 0.45
USHBP1-202ENST00000324554 NHEJ1Q9H9Q4 299 aaPredicted RBP17.88■□□□□ 0.45
USHBP1-202ENST00000324554 FAN1Q9Y2M0 1017 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 SAR1BQ9Y6B6 198 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 DUSP10Q9Y6W6 482 aa17.88■□□□□ 0.45
USHBP1-202ENST00000324554 PVALEFA0A1B0GWK0 134 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 CYLC1P35663 651 aaPredicted RBP17.87■□□□□ 0.45
USHBP1-202ENST00000324554 FIGNQ5HY92 759 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 KIAA1328Q86T90 577 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 JAKMIP2Q96AA8 810 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 CDK5RAP3Q96JB5 506 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 PCMTD1Q96MG8 357 aaPredicted RBP17.87■□□□□ 0.45
USHBP1-202ENST00000324554 TRERF1Q96PN7 1200 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 JMJD4Q9H9V9 463 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 ZNHIT6Q9NWK9 470 aaKnown RBP17.87■□□□□ 0.45
USHBP1-202ENST00000324554 A0A1W2PQJ5 194 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 PPP1R11O60927 126 aaPredicted RBP17.87■□□□□ 0.45
USHBP1-202ENST00000324554 EIF3JO75822 258 aaKnown RBP17.87■□□□□ 0.45
USHBP1-202ENST00000324554 TTLL1O95922 423 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 USP14P54578 494 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 ZNF543Q08ER8 600 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 PDIA5Q14554 519 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 ZSCAN26Q16670 478 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 MUM1L1Q5H9M0 696 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 DYMQ7RTS9 669 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 CAPZA3Q96KX2 299 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 NUDT12Q9BQG2 462 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 RAB34Q9BZG1 259 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 GBP3Q9H0R5 595 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 SUGT1Q9Y2Z0 365 aa17.87■□□□□ 0.45
USHBP1-202ENST00000324554 PNMA6FA0A0J9YX94 578 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 TNNI2P48788 182 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 CYP27A1Q02318 531 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 R3HDM1Q15032 1099 aaKnown RBP17.86■□□□□ 0.45
USHBP1-202ENST00000324554 FKBP15Q5T1M5 1219 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 PPP1R18Q6NYC8 613 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 CCDC170Q8IYT3 715 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 ADGRF4Q8IZF3 695 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 RAD54LQ92698 747 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 RIC8AQ9NPQ8 531 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 SERPINB13Q9UIV8 391 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 C10orf71Q711Q0 1435 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 EIF3CLB5ME19 914 aaKnown RBP17.86■□□□□ 0.45
USHBP1-202ENST00000324554 TULP2O00295 520 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 TUBBP07437 444 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 IRX5P78411 483 aaPredicted RBP17.86■□□□□ 0.45
USHBP1-202ENST00000324554 UBE2SQ16763 222 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 HHIPL2Q6UWX4 724 aa17.86■□□□□ 0.45
USHBP1-202ENST00000324554 SNX29Q8TEQ0 813 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms