RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 GKAP1Q5VSY0 366 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 GJA10Q969M2 543 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 EMILIN3Q9NT22 766 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 CDK8P49336 464 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 CACNB1Q02641 598 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 PABPC4Q13310 644 aaKnown RBP eCLIP16.16■□□□□ 0.181e-6■■■■□ 20.9
TCOF1-201ENST00000323668 GLE1Q53GS7 698 aaKnown RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 GSPT2Q8IYD1 628 aaKnown RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 HNRNPLLQ8WVV9 542 aaKnown RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 CPVLQ9H3G5 476 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 ASIC3Q9UHC3 531 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 PPP1R3GB7ZBB8 358 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 CYP2J2P51589 502 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 MAEAQ7L5Y9 396 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 WHAMMQ8TF30 809 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 FAM84BQ96KN1 310 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 MLXIPQ9HAP2 919 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 KCND1Q9NSA2 647 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 BARHL2Q9NY43 387 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 NFU1Q9UMS0 254 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 TARSL2A2RTX5 802 aaKnown RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 PGRMC1O00264 195 aaKnown RBP16.16■□□□□ 0.18
TCOF1-201ENST00000323668 CYP4A11Q02928 519 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 TRIM65Q6PJ69 517 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 MMS19Q96T76 1030 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 FUT8Q9BYC5 575 aa16.16■□□□□ 0.18
TCOF1-201ENST00000323668 LRRC53A6NM62 1247 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 CELF1Q92879 486 aaKnown RBP16.15■□□□□ 0.18
TCOF1-201ENST00000323668 PARP2Q9UGN5 583 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 GRM4Q14833 912 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 RBM26Q5T8P6 1007 aaKnown RBP16.15■□□□□ 0.18
TCOF1-201ENST00000323668 PNMA8AQ86V59 439 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-201ENST00000323668 ZNF34Q8IZ26 560 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 AFPP02771 609 aaKnown RBP16.15■□□□□ 0.18
TCOF1-201ENST00000323668 SETDB1Q15047 1291 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 NAA35Q5VZE5 725 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 ADAT2Q7Z6V5 191 aaKnown RBP16.15■□□□□ 0.18
TCOF1-201ENST00000323668 IFT74Q96LB3 600 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 OSBPL9Q96SU4 736 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 HDAC9Q9UKV0 1011 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 FAM170AA1A519 330 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 TTLL1O95922 423 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 KRT5P13647 590 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 SF3A3Q12874 501 aaKnown RBP eCLIP16.15■□□□□ 0.18
TCOF1-201ENST00000323668 ZNF365Q70YC5 407 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 KRT26Q7Z3Y9 468 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 TEKT1Q969V4 418 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 IMPG2Q9BZV3 1241 aa16.15■□□□□ 0.18
TCOF1-201ENST00000323668 ZNF18P17022 549 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 IFT88Q13099 833 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 NOA1Q8NC60 698 aaKnown RBP16.14■□□□□ 0.17
TCOF1-201ENST00000323668 PBKQ96KB5 322 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 VIPAS39Q9H9C1 493 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 FERP16591 822 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 C10orf76Q5T2E6 689 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 ANKRD40Q6AI12 368 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 FAM178BQ8IXR5 827 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 RNF10Q8N5U6 811 aaKnown RBP16.14■□□□□ 0.17
TCOF1-201ENST00000323668 SH3RF3Q8TEJ3 882 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-201ENST00000323668 TRIM9Q9C026 710 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 ARHGEF10LQ9HCE6 1279 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 KDM6AO15550 1401 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-201ENST00000323668 SIGLEC1Q9BZZ2 1709 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 SRGNP10124 158 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 NR1D1P20393 614 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 KCNQ4P56696 695 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 STAG2Q8N3U4 1231 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 GUF1Q8N442 669 aaKnown RBP16.14■□□□□ 0.17
TCOF1-201ENST00000323668 SLC44A5Q8NCS7 719 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 LRRN4CLQ8ND94 238 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 FBF1Q8TES7 1133 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 TRIM10Q9UDY6 481 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 MYO5BQ9ULV0 1848 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 GAS7O60861 476 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 PLA2G4BP0C869 781 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 SMTNP53814 917 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 PROM2Q8N271 834 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 RSRC1Q96IZ7 334 aaKnown RBP16.14■□□□□ 0.17
TCOF1-201ENST00000323668 PSD3Q9NYI0 1048 aa16.14■□□□□ 0.17
TCOF1-201ENST00000323668 TOM1O60784 492 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 FOSP01100 380 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-201ENST00000323668 IRX5P78411 483 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-201ENST00000323668 SLFN13Q68D06 897 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 NFRKBQ6P4R8 1299 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 AEBP2Q6ZN18 517 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-201ENST00000323668 FBXO11Q86XK2 927 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 SPATA4Q8NEY3 305 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 COL15A1P39059 1388 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 CCDC169A6NNP5 214 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 CD44P16070 742 aaKnown RBP16.13■□□□□ 0.17
TCOF1-201ENST00000323668 LACTBP83111 547 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-201ENST00000323668 NKX1-1Q15270 411 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-201ENST00000323668 AGPAT5Q9NUQ2 364 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 SERPINB13Q9UIV8 391 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 POTEMA6NI47 508 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 RHOBTB3O94955 611 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 FCER1AP12319 257 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 SLC16A2P36021 539 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 TROAPQ12815 778 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 ALKBH5Q6P6C2 394 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms