RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 VGLL3A8MV65 326 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 PODXLO00592 558 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 MYCLP12524 364 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 PDE6AP16499 860 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 TIMM10P62072 90 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 RBL2Q08999 1139 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 KLC3Q6P597 504 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 PODNQ7Z5L7 613 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 ARHGAP18Q8N392 663 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 DPH5Q9H2P9 285 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 EPB41L5Q9HCM4 733 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 GPHNQ9NQX3 736 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 NDE1Q9NXR1 346 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 HESX1Q9UBX0 185 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 SGK1O00141 431 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 MYO1FO00160 1098 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 GNPATO15228 680 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 NT5C1BQ96P26 610 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 ARHGEF40Q8TER5 1519 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 ZNF233A6NK53 670 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 APOEP02649 317 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 USH1GQ495M9 461 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 IFNL3Q8IZI9 196 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 TSC22D3Q99576 134 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 UPF3AQ9H1J1 476 aaKnown RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 CFAP73A6NFT4 308 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 CREB3O43889 395 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 SLFN14P0C7P3 912 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 TECP42680 631 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 KRT24Q2M2I5 525 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 FAM173BQ6P4H8 233 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 LRRC59Q96AG4 307 aaKnown RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 JPH2Q9BR39 696 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 CHD1O14646 1710 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 EXOC1LA0A1B0GW35 172 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 GPATCH4Q5T3I0 446 aaKnown RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 FAM160B1Q5W0V3 765 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 KLHL29Q96CT2 875 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 NHEJ1Q9H9Q4 299 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-201ENST00000302516 CCDC87Q9NVE4 849 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 ZNF148Q9UQR1 794 aa8.28□□□□□ -1.08
SF3B3-201ENST00000302516 ATP8B3O60423 1300 aa8.27□□□□□ -1.08
SF3B3-201ENST00000302516 RNF17Q9BXT8 1623 aaKnown RBP8.27□□□□□ -1.08
SF3B3-201ENST00000302516 HNRNPCL1O60812 293 aaKnown RBP8.27□□□□□ -1.08
SF3B3-201ENST00000302516 FBLN1P23142 703 aa8.27□□□□□ -1.08
SF3B3-201ENST00000302516 GUCY2CP25092 1073 aa8.27□□□□□ -1.08
SF3B3-201ENST00000302516 ORC2Q13416 577 aaPredicted RBP8.27□□□□□ -1.08
SF3B3-201ENST00000302516 TFDP1Q14186 410 aa8.27□□□□□ -1.08
SF3B3-201ENST00000302516 TEDDM1Q5T9Z0 273 aa8.27□□□□□ -1.08
SF3B3-201ENST00000302516 PPWD1Q96BP3 646 aaKnown RBP8.27□□□□□ -1.08
SF3B3-201ENST00000302516 TMEM206Q9H813 350 aa8.27□□□□□ -1.08
SF3B3-201ENST00000302516 FOXP2O15409 715 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ZAP70P43403 619 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 FKBP3Q00688 224 aaKnown RBP8.27□□□□□ -1.09
SF3B3-201ENST00000302516 KCTD16Q68DU8 428 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 OTUD7BQ6GQQ9 843 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 CXorf38Q8TB03 319 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 MAGOHBQ96A72 148 aaKnown RBP8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TNKSO95271 1327 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ERVK-7P63135 1459 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ANO9A1A5B4 782 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 PYGBP11216 843 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 EIF4A1P60842 406 aaKnown RBP8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ICE2Q659A1 982 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 PCGF5Q86SE9 256 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ARHGEF25Q86VW2 580 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 PNMA1Q8ND90 353 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 AS3MTQ9HBK9 375 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 IVNS1ABPQ9Y6Y0 642 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 F8W8V4 182 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TFAP4Q01664 338 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TERF2Q15554 542 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ARHGEF16Q5VV41 709 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 RHOT2Q8IXI1 618 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 PROM2Q8N271 834 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 HDAC11Q96DB2 347 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ADPGKQ9BRR6 497 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 CLIC4Q9Y696 253 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 NDUFA10O95299 355 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 NR2F2P24468 414 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 POLD1P28340 1107 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 MKRN3Q13064 507 aaKnown RBP8.27□□□□□ -1.09
SF3B3-201ENST00000302516 BSPRYQ5W0U4 402 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ANKARQ7Z5J8 1434 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TCP11Q8WWU5 503 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TRAIPQ9BWF2 469 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 PARD6BQ9BYG5 372 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 MAPK4P31152 587 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ZMYM1Q5SVZ6 1142 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TRIM33Q9UPN9 1127 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ZCCHC11Q5TAX3 1644 aaKnown RBP8.27□□□□□ -1.09
SF3B3-201ENST00000302516 SPAG7O75391 227 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 MMP1P03956 469 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 PTH1RQ03431 593 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.27□□□□□ -1.092e-6■■■■■ 54.9
SF3B3-201ENST00000302516 ANTXR1Q9H6X2 564 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ATP8A1Q9Y2Q0 1164 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 NUB1Q9Y5A7 615 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 ABCA8O94911 1581 aa8.27□□□□□ -1.09
SF3B3-201ENST00000302516 GLI2P10070 1586 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms