RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 KAT14Q9H8E8 782 aa17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 MRPL11Q9Y3B7 192 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-201ENST00000301897 ABHD14A-ACY1A0A1B0GW23 586 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 TRIM6-TRIM34B2RNG4 842 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 ZNF213O14771 459 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 CXCL10P02778 98 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 GRB10Q13322 594 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 HDAC1Q13547 482 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 LY6KQ17RY6 165 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 GDF6Q6KF10 455 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 TBC1D10CQ8IV04 446 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 C7orf31Q8N865 590 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 SYTL5Q8TDW5 730 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 GTF2IRD1Q9UHL9 959 aa17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 ARIH1Q9Y4X5 557 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-201ENST00000301897 EIF3JO75822 258 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 GOLGA8HP0CJ92 632 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 PTK7Q13308 1070 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 LAMC2Q13753 1193 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 ARHGEF16Q5VV41 709 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 FBXO11Q86XK2 927 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 ADGRF4Q8IZF3 695 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 PPTC7Q8NI37 304 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 PPP1R13LQ8WUF5 828 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 ANKS1AQ92625 1134 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 KAT2BQ92831 832 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 TAAR1Q96RJ0 339 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 RAD9AQ99638 391 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 UBA5Q9GZZ9 404 aa17.25■□□□□ 0.35
CCDC88B-201ENST00000301897 NEDD4P46934 1319 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 LAMA4Q16363 1823 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 PTPRSQ13332 1948 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 CKBP12277 381 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 IKBKEQ14164 716 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 KCNV1Q6PIU1 500 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 CHST3Q7LGC8 479 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 TGS1Q96RS0 853 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 CTAGE1Q96RT6 745 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 DDX41Q9UJV9 622 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 MRVI1Q9Y6F6 885 aa17.24■□□□□ 0.35
CCDC88B-201ENST00000301897 EMSYQ7Z589 1322 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 PIEZO1Q92508 2521 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 COL4A4P53420 1690 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 LPXNO60711 386 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 KDM4AO75164 1064 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 ARHGEF15O94989 841 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 GJB5O95377 273 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 F2P00734 622 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 PARP1P09874 1014 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 PSEN2P49810 448 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 QRICH1Q2TAL8 776 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 KRT40Q6A162 431 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 SAMD3Q8N6K7 520 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 DHX38Q92620 1227 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 RILPL2Q969X0 211 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 ZSCAN10Q96SZ4 725 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 ZKSCAN3Q9BRR0 538 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 MAP3K20Q9NYL2 800 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 HDAC6Q9UBN7 1215 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 RAPGEFL1Q9UHV5 662 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 MYH7BA7E2Y1 1941 aa17.23■□□□□ 0.35
CCDC88B-201ENST00000301897 DHX16O60231 1041 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 NR3C2P08235 984 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 EIF2AK2P19525 551 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 RRP1P56182 461 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 ERVK-21P61565 698 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 AAMPQ13685 434 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 MFSD10Q14728 455 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 GPNMBQ14956 572 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 DHX37Q8IY37 1157 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 TBC1D5Q92609 795 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 CRBNQ96SW2 442 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 CPVLQ9H3G5 476 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 PXMP2Q9NR77 195 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 COL20A1Q9P218 1284 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 HCN4Q9Y3Q4 1203 aa17.22■□□□□ 0.35
CCDC88B-201ENST00000301897 HAS3O00219 553 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 HIP1O00291 1037 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 NBNO60934 754 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 PPFIA4O75335 1185 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 HOXD8P13378 290 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 SDSP20132 328 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 DEFB103AP81534 67 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 TRAF1Q13077 416 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 KIAA0753Q2KHM9 967 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 TMEM31Q5JXX7 168 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 GDPD5Q8WTR4 605 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 ALG1Q9BT22 464 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 AMNQ9BXJ7 453 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 KRT23Q9C075 422 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 CNNM2Q9H8M5 875 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 CTNNA3Q9UI47 895 aa17.21■□□□□ 0.35
CCDC88B-201ENST00000301897 SIP14410 1827 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 LCHNA4D1U4 455 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 CFBP00751 764 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 TGFB3P10600 412 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 HSD17B4P51659 736 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 GHRHRQ02643 423 aa17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 IMMTQ16891 758 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-201ENST00000301897 ENAHQ8N8S7 591 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms