RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 LOC102724159A0A0B4J2E5 919 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 TMEM247A6NEH6 219 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 CARSP49589 748 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ILF2Q12905 390 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 MORF4L2Q15014 288 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PWP2Q15269 919 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 CCDC153Q494R4 210 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 RBM20Q5T481 1227 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 WDR75Q8IWA0 830 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 RRAGDQ9NQL2 400 aaPredicted RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ENOPH1Q9UHY7 261 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ALPK2Q86TB3 2170 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PIK3R4Q99570 1358 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 IQANK1A0A1B0GTG1 560 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KRIT1O00522 736 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 RUNDC3AQ59EK9 446 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PRUNE1Q86TP1 453 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SNIP1Q8TAD8 396 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 OSBPL1AQ9BXW6 950 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 TEX14Q8IWB6 1497 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SPTAN1Q13813 2472 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 COPB2P35606 906 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 FOSBP53539 338 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 MYO1EQ12965 1108 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 NCAPH2Q6IBW4 605 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SND1Q7KZF4 910 aaKnown RBP eCLIP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 FBXO28Q9NVF7 368 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ANKFY1Q9P2R3 1169 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ZNF711Q9Y462 761 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SHROOM2Q13796 1616 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KDM3AQ9Y4C1 1321 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 FGD5Q6ZNL6 1462 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 GTPBP10A4D1E9 387 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KRT87PA6NCN2 255 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SLC4A2P04920 1241 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 P4HA1P13674 534 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ARPC4P59998 168 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 CNBD1Q8NA66 436 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SH3GL1Q99961 368 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ATG3Q9NT62 314 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SCN4AP35499 1836 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SAC3D1A6NKF1 404 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PGRMC1O00264 195 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 EEF2P13639 858 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SERPINB3P29508 390 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 TMIEQ8NEW7 156 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 GRPEL2Q8TAA5 225 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 NEK9Q8TD19 979 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 CHAMP1Q96JM3 812 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 EFR3BQ9Y2G0 817 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 RAD21O60216 631 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 INHBAP08476 426 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ANXA13P27216 316 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 POLD1P28340 1107 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 RAP1GAPP47736 663 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 NLRP12P59046 1061 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PAK1Q13153 545 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 E2F4Q16254 413 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 RHOBTB2Q9BYZ6 727 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ABCA4P78363 2273 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 MTRF1O75570 445 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KRT9P35527 623 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 MTHFSP49914 203 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 BPIFB4P59827 614 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 FANCCQ00597 558 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 SFMBT2Q5VUG0 894 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 NACA2Q9H009 215 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 EPN3Q9H201 632 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 NHEJ1Q9H9Q4 299 aaPredicted RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PNMA2Q9UL42 364 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 ZFYVE9O95405 1425 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 APOA4P06727 396 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 PAPOLAP51003 745 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 CPLX3Q8WVH0 158 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KCNH8Q96L42 1107 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 LARP6Q9BRS8 491 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 METTL14Q9HCE5 456 aaKnown RBP5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KRT82Q9NSB4 513 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 NSMCE4AQ9NXX6 385 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 KIAA1468Q9P260 1216 aa5.23□□□□□ -1.57
CSMD3-201ENST00000297405 TNKSO95271 1327 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 PIK3C2GO75747 1445 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 LAD1O00515 517 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 PDE9AO76083 593 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 TP53BP2Q13625 1128 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 TCHHL1Q5QJ38 904 aaPredicted RBP5.22□□□□□ -1.57
CSMD3-201ENST00000297405 CCDC117Q8IWD4 279 aaPredicted RBP5.22□□□□□ -1.57
CSMD3-201ENST00000297405 MCRS1Q96EZ8 462 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 VPS50Q96JG6 964 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 NT5C3AQ9H0P0 336 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 IDH3BO43837 385 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 TGFBR2P37173 567 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 MICALL2Q8IY33 904 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 NSMCE1Q8WV22 266 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 TTC17Q96AE7 1141 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 G3BP2Q9UN86 482 aaKnown RBP5.22□□□□□ -1.57
CSMD3-201ENST00000297405 IPPQ9Y573 584 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 TRIM17Q9Y577 477 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 MYLKQ15746 1914 aa5.22□□□□□ -1.57
CSMD3-201ENST00000297405 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms