RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CYP4F11Q9HBI6 524 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 CC2D2AQ9P2K1 1620 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 TSC22D2O75157 780 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 E2F6O75461 281 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 CPP00450 1065 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 DR1Q01658 176 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 DRP2Q13474 957 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 MESDQ14696 234 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 CALCRLQ16602 461 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 MCM8Q9UJA3 840 aa12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 ANGEL1Q9UNK9 670 aaKnown RBP12.71□□□□□ -0.38
SHROOM3-201ENST00000296043 EXOC3O60645 756 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 PFKFB2O60825 505 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 ATP6V1B1P15313 513 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 TXKP42681 527 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 TFCP2Q12800 502 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 DIS3L2Q8IYB7 885 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 CYGBQ8WWM9 190 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 GPR101Q96P66 508 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 SLC40A1Q9NP59 571 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 WDR70Q9NW82 654 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 TCP11X1B4DZS4 312 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 DNM2P50570 870 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 CADPS2Q86UW7 1296 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 FBXL13Q8NEE6 735 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 RHOBTB1O94844 696 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 STAT1P42224 750 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 SMTNP53814 917 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 PLCB4Q15147 1175 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 ADALQ6DHV7 355 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 HAUS5O94927 633 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 DEXIO95424 95 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 LDHAL6AQ6ZMR3 332 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 C8orf58Q8NAV2 365 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 HSPA8P11142 646 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 SGO2Q562F6 1265 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 DEPDC1Q5TB30 811 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 MYCT1Q8N699 235 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 CYFIP2Q96F07 1278 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 METTL14Q9HCE5 456 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 KRT7P08729 469 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 TBL3Q12788 808 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 SLC9A5Q14940 896 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 RETREG2Q8NC44 543 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 KLC2Q9H0B6 622 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 ADNPQ9H2P0 1102 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 PEG3Q9GZU2 1588 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 TMCC1O94876 653 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 BLVRAP53004 296 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 PICALMQ13492 652 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 HABP4Q5JVS0 413 aaKnown RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 TRIM8Q9BZR9 551 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 NAIPQ13075 1403 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 CD19P15391 556 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 WASHC5Q12768 1159 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 SMYD4Q8IYR2 804 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 FAM133AQ8N9E0 248 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 STMN3Q9NZ72 180 aa12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 V9GY48 417 aaPredicted RBP12.7□□□□□ -0.38
SHROOM3-201ENST00000296043 MYH9P35579 1960 aaKnown RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 RPS6P62753 249 aaKnown RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 SUCLA2Q9P2R7 463 aaPredicted RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 PARP3Q9Y6F1 533 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 TMPRSS15P98073 1019 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 NANOGNBQ7Z5D8 188 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 POLD4Q9HCU8 107 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 IBTKQ9P2D0 1353 aaPredicted RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 RNF103-CHMP3A0A140T963 221 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 EPM2AIP1Q7L775 607 aaPredicted RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 OPTNQ96CV9 577 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 FAM210AQ96ND0 272 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 CCT7Q99832 543 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 TMEM165Q9HC07 324 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 ADA2Q9NZK5 511 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 XRCC5P13010 732 aaKnown RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 NFRKBQ6P4R8 1299 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 VSTM4Q8IW00 320 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 SFMBT1Q9UHJ3 866 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 CFAP69A5D8W1 941 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 H7C0C1 242 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 ATP5OP48047 213 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 KCNA1Q09470 495 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 COPB2P35606 906 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 MDH1BQ5I0G3 518 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 CDH24Q86UP0 819 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 SPATA1Q5VX52 437 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 SLC26A7Q8TE54 656 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 A0A1B0GW55 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 IGF2BP3O00425 579 aaKnown RBP eCLIP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 MEFVO15553 781 aaPredicted RBP12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4L2P0CJ85 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4L3P0CJ86 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4L4P0CJ87 422 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4L5P0CJ88 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4L6P0CJ89 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4L7P0CJ90 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 CHMP6Q96FZ7 201 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 DUX4Q9UBX2 424 aa12.69□□□□□ -0.38
SHROOM3-201ENST00000296043 ZNF652Q9Y2D9 606 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms