RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CTNND1O60716 968 aaKnown RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 RNF40O75150 1001 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 FXR1P51114 621 aaKnown RBP eCLIP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 IRX3P78415 501 aaPredicted RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 SREBF2Q12772 1141 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 PPIL2Q13356 520 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 PTPN21Q16825 1174 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 ZNF572Q7Z3I7 529 aaPredicted RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 MICU3Q86XE3 530 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 RAB11FIP4Q86YS3 637 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 COG1Q8WTW3 980 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 MS4A4AQ96JQ5 239 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 BEGAINQ9BUH8 593 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 FAM204AQ9H8W3 233 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 RNF186Q9NXI6 227 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 MCM9Q9NXL9 1143 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 TSKSQ9UJT2 592 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 JRKLQ9Y4A0 524 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 SLC4A4Q9Y6R1 1079 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 BAZ2AQ9UIF9 1905 aaKnown RBP11.52□□□□□ -0.56
UPF3B-201ENST00000276201 ANO9A1A5B4 782 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PATL2C9JE40 543 aaKnown RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 CYP2D6P10635 497 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 HSPA8P11142 646 aaKnown RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 CD44P16070 742 aaKnown RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 GRIN1Q05586 938 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 GBP6Q6ZN66 633 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 CRACR2BQ8N4Y2 399 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 CSRNP2Q9H175 543 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 EHD4Q9H223 541 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 ATP8A2Q9NTI2 1148 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 B4E1Z4 1266 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 IRF6O14896 467 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 CA12O43570 354 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 RHOXF2BP0C7M4 288 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PTPRAP18433 802 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 ATP2B1P20020 1258 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 CTCFP49711 727 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 GTF2A1P52655 376 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 COPB1P53618 953 aaKnown RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PPATQ06203 517 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 KRT31Q15323 416 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 RTN1Q16799 776 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 NFXL1Q6ZNB6 911 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PACS2Q86VP3 889 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 NOA1Q8NC60 698 aaKnown RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 ANKRD20A12PQ8NF67 263 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 RHOXF2Q9BQY4 288 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 RNF26Q9BY78 433 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-201ENST00000276201 ZSWIM4Q9H7M6 989 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PICK1Q9NRD5 415 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PCDHB6Q9Y5E3 794 aa11.52□□□□□ -0.57
UPF3B-201ENST00000276201 PHIPQ8WWQ0 1821 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 ATAD5Q96QE3 1844 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 TESPA1A2RU30 521 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-201ENST00000276201 TRIM75PA6NK02 468 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 GSG1L2A8MUP6 293 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 IGF2BP3O00425 579 aaKnown RBP eCLIP11.51□□□□□ -0.57
UPF3B-201ENST00000276201 CAP2P40123 477 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 JAG1P78504 1218 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 SHROOM1Q2M3G4 852 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-201ENST00000276201 TADA2BQ86TJ2 420 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 CCDC84Q86UT8 332 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-201ENST00000276201 ACRBPQ8NEB7 543 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 STAG1Q8WVM7 1258 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 BRI3BPQ8WY22 251 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 CEP89Q96ST8 783 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 DNAJC7Q99615 494 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 PTPN18Q99952 460 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 SENP2Q9HC62 589 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 SAGE1Q9NXZ1 904 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 SERPINB13Q9UIV8 391 aa11.51□□□□□ -0.57
UPF3B-201ENST00000276201 EPN1Q9Y6I3 576 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-201ENST00000276201 CYP2D7A0A087X1C5 515 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 TRPA1O75762 1119 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 GTF2A2P52657 109 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 GABPAQ06546 454 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 IQCEQ6IPM2 695 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 FOXR1Q6PIV2 292 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 MMS22LQ6ZRQ5 1243 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 IFNL1Q8IU54 200 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 NKX2-3Q8TAU0 364 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 SUGCTQ9HAC7 445 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 EPB41L4AQ9HCS5 686 aaPredicted RBP11.5□□□□□ -0.57
UPF3B-201ENST00000276201 KCNH4Q9UQ05 1017 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 CCL15-CCL14A0A0B4J2E2 113 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 A0A0U1RQJ8 604 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 SMIM22K7EJ46 135 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 IFIT3O14879 490 aaKnown RBP11.5□□□□□ -0.57
UPF3B-201ENST00000276201 NDUFA10O95299 355 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 LBX1P52954 281 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 INHBEP58166 350 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 SNAPC2Q13487 334 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 STIM1Q13586 685 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 SART3Q15020 963 aaKnown RBP11.5□□□□□ -0.57
UPF3B-201ENST00000276201 MEA1Q16626 185 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 CCL15Q16663 113 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 AKNAD1Q5T1N1 836 aa11.5□□□□□ -0.57
UPF3B-201ENST00000276201 ATRIPQ8WXE1 791 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms