RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 PTK2Q05397 1052 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 SKIV2LQ15477 1246 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 GRAMD4Q6IC98 578 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 DESI2Q9BSY9 194 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 TFAP4Q01664 338 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 PDCD6IPQ8WUM4 868 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 NRBP2Q9NSY0 501 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 UNC13AQ9UPW8 1703 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 GOLGA8SH3BPF8 625 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 NFKBIAP25963 317 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 TJAP1Q5JTD0 557 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 CYP4F22Q6NT55 531 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 CMTR1Q8N1G2 835 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 MRPL50Q8N5N7 158 aaKnown RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 PHACTR3Q96KR7 559 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 YIPF2Q9BWQ6 316 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 STRIP2Q9ULQ0 834 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 RLBP1P12271 317 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 ARL4AP40617 200 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 LRRC23Q53EV4 343 aaPredicted RBP12.32□□□□□ -0.44
PTPN4-201ENST00000263708 NDUFAF2Q8N183 169 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 IQCDQ96DY2 449 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 RUNDC3BQ96NL0 473 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 USP26Q9BXU7 913 aa12.32□□□□□ -0.44
PTPN4-201ENST00000263708 NAF1Q96HR8 494 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 CHCHD3Q9NX63 227 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 ZNF212Q9UDV6 495 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SOS1Q07889 1333 aaPredicted RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 ADGRL1O94910 1474 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 CHMLP26374 656 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SERPINI1Q99574 410 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SLC4A7Q9Y6M7 1214 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 CD109Q6YHK3 1445 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 PDE8AO60658 829 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SIX6OS1Q8N1H7 587 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 UPF3AQ9H1J1 476 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 INTS9Q9NV88 658 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 RALGAPBQ86X10 1494 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SNX2O60749 519 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 MAPK4P31152 587 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 CALN1Q9BXU9 219 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 ANKRD36BQ8N2N9 1353 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SNX21Q969T3 373 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 UBN2Q6ZU65 1347 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 KRT87PA6NCN2 255 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 HSPA6P17066 643 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 GUCY2DQ02846 1103 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 CACTINQ8WUQ7 758 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 ZNF532Q9HCE3 1301 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 PRPF4O43172 522 aaKnown RBP eCLIP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 SCNN1DP51172 638 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 FAM133BQ5BKY9 247 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 RINLQ6ZS11 566 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 STX18Q9P2W9 335 aaKnown RBP12.31□□□□□ -0.44
PTPN4-201ENST00000263708 TNNI3KQ59H18 835 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 MFSD14BQ5SR56 506 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 TTLL7Q6ZT98 887 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 ING2Q9H160 280 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 FPGT-TNNI3KV9GXZ4 949 aa12.31□□□□□ -0.44
PTPN4-201ENST00000263708 CENPKQ9BS16 269 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 ABT1Q9ULW3 272 aaKnown RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 GTF2IP78347 998 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 TFAMQ00059 246 aaKnown RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 SLMAPQ14BN4 828 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 CEP85Q6P2H3 762 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 TMCO5AQ8N6Q1 288 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 CCDC197Q8NCU1 140 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 TRIM45Q9H8W5 580 aaPredicted RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 LRRC4Q9HBW1 653 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 INO80B-WBP1J3KQ70 363 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 KRT1P04264 644 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 IFT88Q13099 833 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 INTS4Q96HW7 963 aaKnown RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 INO80BQ9C086 356 aaPredicted RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 L3MBTL1Q9Y468 752 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 PLS3P13797 630 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 POLE2P56282 527 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 UBE3AQ05086 875 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 MFAP3P55082 362 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 SRRM1Q8IYB3 904 aaKnown RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 BRD1O95696 1058 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 RECQLP46063 649 aaPredicted RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 RASSF7Q02833 373 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 CERKLQ49MI3 558 aaPredicted RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 SGO2Q562F6 1265 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 SLC39A2Q9NP94 309 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 SBNO1A3KN83 1393 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 ARIH2O95376 493 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 PATL1Q86TB9 770 aaKnown RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 APPBP2Q92624 585 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 KLHL29Q96CT2 875 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 CYTH2Q99418 400 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 TRPC5Q9UL62 973 aaPredicted RBP12.3□□□□□ -0.44
PTPN4-201ENST00000263708 MYO1FO00160 1098 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 CCDC159P0C7I6 412 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 LLGL1Q15334 1064 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 HSPH1Q92598 858 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 ARHGAP45Q92619 1136 aa12.3□□□□□ -0.44
PTPN4-201ENST00000263708 EIF4G3O43432 1585 aaKnown RBP12.29□□□□□ -0.44
PTPN4-201ENST00000263708 MRC2Q9UBG0 1479 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms