RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MFAP3LO75121 409 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 ECM2O94769 699 aaPredicted RBP11.73□□□□□ -0.53
CD44-201ENST00000263398 EIF4A3P38919 411 aaKnown RBP11.73□□□□□ -0.53
CD44-201ENST00000263398 LMNB2Q03252 620 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 BFSP1Q12934 665 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 TMC4Q7Z404 712 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 SMCR8Q8TEV9 937 aaPredicted RBP11.73□□□□□ -0.53
CD44-201ENST00000263398 POMGNT1Q8WZA1 660 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 HAUS1Q96CS2 278 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 NDST4Q9H3R1 872 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 NOD1Q9Y239 953 aa11.73□□□□□ -0.53
CD44-201ENST00000263398 TNNC2P02585 160 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 HSPA6P17066 643 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 PLCG1P19174 1290 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 MCAMP43121 646 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 LRRC63Q05C16 580 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 KRT31Q15323 416 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 FBXO38Q6PIJ6 1188 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 ZNF579Q8NAF0 562 aaKnown RBP11.72□□□□□ -0.53
CD44-201ENST00000263398 NHEJ1Q9H9Q4 299 aaPredicted RBP11.72□□□□□ -0.53
CD44-201ENST00000263398 MLXIPQ9HAP2 919 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 BCAP29Q9UHQ4 241 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 YARSP54577 528 aaKnown RBP11.72□□□□□ -0.53
CD44-201ENST00000263398 C10orf76Q5T2E6 689 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 DCAF15Q66K64 600 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 PHLDB3Q6NSJ2 640 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 EMILIN3Q9NT22 766 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 CCPG1Q9ULG6 757 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 BBOX1O75936 387 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 SLC12A2P55011 1212 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 CYP27A1Q02318 531 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 NLGN1Q8N2Q7 840 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 DISC1Q9NRI5 854 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 NCAPD2Q15021 1401 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 RFX7Q2KHR2 1363 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 WDR19Q8NEZ3 1342 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 STAM2O75886 525 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 SUN1O94901 812 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 TMEM191BP0C7N4 346 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 SLC8A1P32418 973 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 ARID5BQ14865 1188 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 KMT5BQ4FZB7 885 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 TCP11X2Q5H9J9 407 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 BSPRYQ5W0U4 402 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 PBKQ96KB5 322 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 MTA3Q9BTC8 594 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
CD44-201ENST00000263398 ALKQ9UM73 1620 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 STK36Q9NRP7 1315 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 CYP2D7A0A087X1C5 515 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 TCP10L2B9ZVM9 353 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 HNRNPDLO14979 420 aaKnown RBP11.71□□□□□ -0.53
CD44-201ENST00000263398 USP17L8P0C7I0 530 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 PRKG1Q13976 671 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 KRT81Q14533 505 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 CASP8Q14790 479 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 USP17L2Q6R6M4 530 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 FMR1NBQ8N0W7 255 aaPredicted RBP11.71□□□□□ -0.53
CD44-201ENST00000263398 CNKSR1Q969H4 720 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 NACC1Q96RE7 527 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 BRIP1Q9BX63 1249 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 GJB4Q9NTQ9 266 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 ADGRB3O60242 1522 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 PNMA6AP0CW24 399 aaPredicted RBP11.71□□□□□ -0.53
CD44-201ENST00000263398 KIF11P52732 1056 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 PSMD6Q15008 389 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 NSMCE1Q8WV22 266 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 STAG1Q8WVM7 1258 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 COA7Q96BR5 231 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 TRIM11Q96F44 468 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 TACO1Q9BSH4 297 aaKnown RBP11.71□□□□□ -0.53
CD44-201ENST00000263398 HESX1Q9UBX0 185 aa11.71□□□□□ -0.53
CD44-201ENST00000263398 LRRIQ4A6NIV6 560 aa11.71□□□□□ -0.54
CD44-201ENST00000263398 SERPING1P05155 500 aa11.71□□□□□ -0.54
CD44-201ENST00000263398 ERFEQ4G0M1 354 aa11.71□□□□□ -0.54
CD44-201ENST00000263398 SCYL2Q6P3W7 929 aa11.71□□□□□ -0.54
CD44-201ENST00000263398 PROCA1Q8NCQ7 364 aaPredicted RBP11.71□□□□□ -0.54
CD44-201ENST00000263398 ADPGKQ9BRR6 497 aa11.71□□□□□ -0.54
CD44-201ENST00000263398 NUF2Q9BZD4 464 aa11.71□□□□□ -0.54
CD44-201ENST00000263398 OSBPL5Q9H0X9 879 aaPredicted RBP11.71□□□□□ -0.54
CD44-201ENST00000263398 CXCR5P32302 372 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 GRM1Q13255 1194 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 MAP3K21Q5TCX8 1036 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 TMTC3Q6ZXV5 915 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 MB21D1Q8N884 522 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 FAM133AQ8N9E0 248 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 CCDC197Q8NCU1 140 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 MICAL1Q8TDZ2 1067 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PPP4R1Q8TF05 950 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 ATP6V0A1Q93050 837 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 BPIFA3Q9BQP9 254 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 CPSF2Q9P2I0 782 aaKnown RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 RRP15Q9Y3B9 282 aaKnown RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 POLGP54098 1239 aaPredicted RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 CAPN12Q6ZSI9 719 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 KCTD1Q719H9 257 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 ZNF653Q96CK0 615 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 FAM81BQ96LP2 452 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 ZNF577Q9BSK1 485 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 TACC3Q9Y6A5 838 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms