RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 POTEMA6NI47 508 aa18.25■□□□□ 0.51
HOXD3-201ENST00000249440 C6orf229H3BNL8 230 aa18.25■□□□□ 0.51
HOXD3-201ENST00000249440 USO1O60763 962 aaKnown RBP18.25■□□□□ 0.51
HOXD3-201ENST00000249440 SRGAP2O75044 1071 aa18.25■□□□□ 0.51
HOXD3-201ENST00000249440 CYP27A1Q02318 531 aa18.25■□□□□ 0.51
HOXD3-201ENST00000249440 CAMKK2Q96RR4 588 aa18.25■□□□□ 0.51
HOXD3-201ENST00000249440 RIC8AQ9NPQ8 531 aa18.25■□□□□ 0.51
HOXD3-201ENST00000249440 NKRFO15226 690 aaKnown RBP eCLIP18.24■□□□□ 0.51
HOXD3-201ENST00000249440 TTLL1O95922 423 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 IDEP14735 1019 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 SLC27A3Q5K4L6 730 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 SIK3Q9Y2K2 1263 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 EDIL3O43854 480 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 AKR1B1P15121 316 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 TNNI2P48788 182 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 GTF2IP78347 998 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 MAP9Q49MG5 647 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 TRIM58Q8NG06 486 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 DDX12PQ92771 950 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 CAPZA3Q96KX2 299 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 GPCPD1Q9NPB8 672 aa18.24■□□□□ 0.51
HOXD3-201ENST00000249440 IGKV6D-41A0A0C4DH26 115 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 MACROD2A1Z1Q3 448 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 TARSL2A2RTX5 802 aaKnown RBP18.23■□□□□ 0.51
HOXD3-201ENST00000249440 GYS1P13807 737 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 EIF6P56537 245 aaKnown RBP18.23■□□□□ 0.51
HOXD3-201ENST00000249440 HSP90B2PQ58FF3 399 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 FOXR2Q6PJQ5 311 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 DPP8Q6V1X1 898 aaPredicted RBP18.23■□□□□ 0.51
HOXD3-201ENST00000249440 C2CD5Q86YS7 1000 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 NEK11Q8NG66 645 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 TSG101Q99816 390 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 MMRN2Q9H8L6 949 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 JADE2Q9NQC1 790 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 FAM207AQ9NSI2 230 aaPredicted RBP18.23■□□□□ 0.51
HOXD3-201ENST00000249440 SWAP70Q9UH65 585 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 DUSP10Q9Y6W6 482 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 HOXA10P31260 410 aaPredicted RBP18.23■□□□□ 0.51
HOXD3-201ENST00000249440 ZNF543Q08ER8 600 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 CCDC96Q2M329 555 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 IQCEQ6IPM2 695 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 ADGRF4Q8IZF3 695 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 CAGE1Q8TC20 777 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 AKT1S1Q96B36 256 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 IFIH1Q9BYX4 1025 aaKnown RBP18.23■□□□□ 0.51
HOXD3-201ENST00000249440 DEF6Q9H4E7 631 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 JMJD4Q9H9V9 463 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 VPS18Q9P253 973 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 SERPINB13Q9UIV8 391 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 SUGT1Q9Y2Z0 365 aa18.23■□□□□ 0.51
HOXD3-201ENST00000249440 ZNF263O14978 683 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 MRPL12P52815 198 aaKnown RBP18.22■□□□□ 0.51
HOXD3-201ENST00000249440 GYS2P54840 703 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 EHHADHQ08426 723 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 SEPT2Q15019 361 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 TMEM119Q4V9L6 283 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 CUL5Q93034 780 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 CRAMP1Q96RY5 1269 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 NUDT12Q9BQG2 462 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 ARHGAP20Q9P2F6 1191 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 DDX25Q9UHL0 483 aaKnown RBP18.22■□□□□ 0.51
HOXD3-201ENST00000249440 JRKLQ9Y4A0 524 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 LCA5LO95447 670 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 PLEKP08567 350 aaPredicted RBP18.22■□□□□ 0.51
HOXD3-201ENST00000249440 CLK2P49760 499 aaKnown RBP18.22■□□□□ 0.51
HOXD3-201ENST00000249440 HNRNPH2P55795 449 aaKnown RBP18.22■□□□□ 0.51
HOXD3-201ENST00000249440 VIPAS39Q9H9C1 493 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 PCDHA13Q9Y5I0 950 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 MYO3BQ8WXR4 1341 aa18.22■□□□□ 0.51
HOXD3-201ENST00000249440 MARCH6O60337 910 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 TACC1O75410 805 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 KIF11P52732 1056 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 GPATCH4Q5T3I0 446 aaKnown RBP18.21■□□□□ 0.51
HOXD3-201ENST00000249440 KRT26Q7Z3Y9 468 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 COL23A1Q86Y22 540 aaPredicted RBP18.21■□□□□ 0.51
HOXD3-201ENST00000249440 MED4Q9NPJ6 270 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 MYH7BA7E2Y1 1941 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 MYH10P35580 1976 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 GCFC2P16383 781 aaKnown RBP18.21■□□□□ 0.51
HOXD3-201ENST00000249440 LRRC55Q6ZSA7 311 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 TMC4Q7Z404 712 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 KCNK18Q7Z418 384 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 MYOCDQ8IZQ8 938 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 FAM71BQ8TC56 605 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 CCDC102AQ96A19 550 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 EDEM3Q9BZQ6 932 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 BMP2KQ9NSY1 1161 aaPredicted RBP18.21■□□□□ 0.51
HOXD3-201ENST00000249440 PCDHA12Q9UN75 941 aa18.21■□□□□ 0.51
HOXD3-201ENST00000249440 LRRIQ3A6PVS8 624 aaPredicted RBP18.2■□□□□ 0.5
HOXD3-201ENST00000249440 EPHB6O15197 1021 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 AKR1B10O60218 316 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 UBE2SQ16763 222 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 NAP1L4Q99733 375 aaKnown RBP18.2■□□□□ 0.5
HOXD3-201ENST00000249440 COA1Q9GZY4 146 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 NT5C3AQ9H0P0 336 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 SH2D4AQ9H788 454 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
HOXD3-201ENST00000249440 C10orf71Q711Q0 1435 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 LRRC53A6NM62 1247 aa18.2■□□□□ 0.5
HOXD3-201ENST00000249440 ZBTB5O15062 677 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms