RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C AAC1P04710 309 aa5.83□□□□□ -1.48
DEF1YKL054C ARO4P32449 370 aaKnown RBP5.83□□□□□ -1.48
DEF1YKL054C CBF5P33322 483 aaKnown RBP RIP-Chip data5.83□□□□□ -1.48not detected
DEF1YKL054C KKQ8P36004 724 aa5.83□□□□□ -1.48
DEF1YKL054C PTC7P38797 343 aa5.83□□□□□ -1.48
DEF1YKL054C YER085CP40058 173 aa5.83□□□□□ -1.48
DEF1YKL054C YMR147WP40218 223 aaKnown RBP5.83□□□□□ -1.48
DEF1YKL054C OPT1P40897 799 aa5.83□□□□□ -1.48
DEF1YKL054C MRK1P50873 501 aa5.83□□□□□ -1.48
DEF1YKL054C YNL092WP53934 400 aa5.83□□□□□ -1.48
DEF1YKL054C NRG1Q03125 231 aa5.83□□□□□ -1.48
DEF1YKL054C TSR1Q07381 788 aaKnown RBP5.83□□□□□ -1.48
DEF1YKL054C SAM1P10659 382 aaKnown RBP5.83□□□□□ -1.48
DEF1YKL054C AMD2P22580 549 aa5.83□□□□□ -1.48
DEF1YKL054C SUA5P32579 426 aa5.83□□□□□ -1.48
DEF1YKL054C PRS1P32895 427 aaKnown RBP5.83□□□□□ -1.48
DEF1YKL054C YKR073CP36153 106 aa5.83□□□□□ -1.48
DEF1YKL054C YHR210CP38893 341 aa5.83□□□□□ -1.48
DEF1YKL054C CDC40P40968 455 aaPredicted RBP5.83□□□□□ -1.48
DEF1YKL054C FAR3P46671 204 aa5.83□□□□□ -1.48
DEF1YKL054C PGA2P53903 129 aa5.83□□□□□ -1.48
DEF1YKL054C ERG5P54781 538 aa5.83□□□□□ -1.48
DEF1YKL054C RKM1Q08961 583 aaPredicted RBP5.83□□□□□ -1.48
DEF1YKL054C RRD2Q12461 358 aa5.83□□□□□ -1.48
DEF1YKL054C RTC1Q08281 1341 aa5.82□□□□□ -1.48
DEF1YKL054C COX1P00401 534 aa5.82□□□□□ -1.48
DEF1YKL054C KRS1P15180 591 aaKnown RBP5.82□□□□□ -1.48
DEF1YKL054C ALG1P16661 449 aa5.82□□□□□ -1.48
DEF1YKL054C MGR1P25573 417 aa5.82□□□□□ -1.48
DEF1YKL054C SWC5P38326 303 aa5.82□□□□□ -1.48
DEF1YKL054C SHQ1P40486 507 aaPredicted RBP5.82□□□□□ -1.48
DEF1YKL054C DPB11P47027 764 aaPredicted RBP5.82□□□□□ -1.48
DEF1YKL054C AIM22P47051 409 aa5.82□□□□□ -1.48
DEF1YKL054C DIA3P52290 468 aa5.82□□□□□ -1.48
DEF1YKL054C MDM30Q05930 598 aa5.82□□□□□ -1.48
DEF1YKL054C SSQ1Q05931 657 aaPredicted RBP5.82□□□□□ -1.48
DEF1YKL054C RRG8Q06109 277 aa5.82□□□□□ -1.48
DEF1YKL054C MDM20Q12387 796 aaKnown RBP5.82□□□□□ -1.48
DEF1YKL054C TRM11Q12463 433 aa5.82□□□□□ -1.48
DEF1YKL054C YER175W-AQ8TGU4 54 aa5.82□□□□□ -1.48
DEF1YKL054C AI5_ALPHAQ9ZZX1 630 aa5.82□□□□□ -1.48
DEF1YKL054C IKI3Q06706 1349 aaKnown RBP5.82□□□□□ -1.48
DEF1YKL054C YPR089WO13585 888 aa5.82□□□□□ -1.48
DEF1YKL054C MSB1P21339 1137 aaKnown RBP5.82□□□□□ -1.48
DEF1YKL054C DAL81P21657 970 aa5.82□□□□□ -1.48
DEF1YKL054C IMG1P25626 169 aa5.82□□□□□ -1.48
DEF1YKL054C CNE1P27825 502 aa5.82□□□□□ -1.48
DEF1YKL054C MVD1P32377 396 aaKnown RBP5.82□□□□□ -1.48
DEF1YKL054C YPT10P38146 199 aa5.82□□□□□ -1.48
DEF1YKL054C CAF130P53280 1122 aaPredicted RBP5.82□□□□□ -1.48
DEF1YKL054C RSN1Q03516 953 aa5.82□□□□□ -1.48
DEF1YKL054C PLB2Q03674 706 aa5.82□□□□□ -1.48
DEF1YKL054C YDL242WQ07746 117 aa5.82□□□□□ -1.48
DEF1YKL054C LEA1Q08963 238 aaPredicted RBP5.82□□□□□ -1.48
DEF1YKL054C INP53Q12271 1107 aa5.82□□□□□ -1.48
DEF1YKL054C CDC36P06100 191 aaPredicted RBP5.81□□□□□ -1.48
DEF1YKL054C CDC6P09119 513 aa5.81□□□□□ -1.48
DEF1YKL054C GSH1P32477 678 aa5.81□□□□□ -1.48
DEF1YKL054C HRB1P38922 454 aaKnown RBP RIP-Chip data5.81□□□□□ -1.48not detected
DEF1YKL054C OTU1P43558 301 aa5.81□□□□□ -1.48
DEF1YKL054C CGR1P53188 120 aa5.81□□□□□ -1.48
DEF1YKL054C DSL1P53847 754 aa5.81□□□□□ -1.48
DEF1YKL054C PET117Q02771 107 aa5.81□□□□□ -1.48
DEF1YKL054C PNG1Q02890 363 aa5.81□□□□□ -1.48
DEF1YKL054C WAR1Q03631 944 aa5.81□□□□□ -1.48
DEF1YKL054C CAB5Q03941 241 aa5.81□□□□□ -1.48
DEF1YKL054C POS5Q06892 414 aa5.81□□□□□ -1.48
DEF1YKL054C CYK3Q07533 885 aa5.81□□□□□ -1.48
DEF1YKL054C SMC5Q08204 1093 aa5.81□□□□□ -1.48
DEF1YKL054C CYC1P00044 109 aaPredicted RBP5.8□□□□□ -1.48
DEF1YKL054C HIS5P07172 385 aa5.8□□□□□ -1.48
DEF1YKL054C PUT2P07275 575 aa5.8□□□□□ -1.48
DEF1YKL054C RIM1P32445 135 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C STV1P37296 890 aa5.8□□□□□ -1.48
DEF1YKL054C MPS3P47069 682 aa5.8□□□□□ -1.48
DEF1YKL054C EMC2P47133 292 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C EFM5P53200 248 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C YGR126WP53274 230 aa5.8□□□□□ -1.48
DEF1YKL054C IPK1Q06667 281 aa5.8□□□□□ -1.48
DEF1YKL054C DIS3Q08162 1001 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C YOL107WQ12239 342 aa5.8□□□□□ -1.48
DEF1YKL054C ZPS1Q12512 249 aa5.8□□□□□ -1.48
DEF1YKL054C GPA1P08539 472 aa5.8□□□□□ -1.48
DEF1YKL054C MSS116P15424 664 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C PMI40P29952 429 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C ERG7P38604 731 aa5.8□□□□□ -1.48
DEF1YKL054C GPI16P38875 610 aa5.8□□□□□ -1.48
DEF1YKL054C ECM10P39987 644 aa5.8□□□□□ -1.48
DEF1YKL054C ADE16P54113 591 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C SLK19Q08581 821 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C YPL216WQ08964 1102 aa5.8□□□□□ -1.48
DEF1YKL054C HMI1Q12039 706 aa5.8□□□□□ -1.48
DEF1YKL054C TGS1Q12052 315 aa5.8□□□□□ -1.48
DEF1YKL054C PUF2Q12221 1075 aaKnown RBP RIP-Chip data5.8□□□□□ -1.48not detected
DEF1YKL054C PKH2Q12236 1081 aaKnown RBP5.8□□□□□ -1.48
DEF1YKL054C MED4Q12343 284 aa5.8□□□□□ -1.48
DEF1YKL054C RIP1P08067 215 aa5.79□□□□□ -1.48
DEF1YKL054C MSF1P08425 469 aa5.79□□□□□ -1.48
DEF1YKL054C SEC63P14906 663 aa5.79□□□□□ -1.48
DEF1YKL054C ACP1P32463 125 aa5.79□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms