RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TRPC5Q9UL62 973 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PTPRGP23470 1445 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 VPS8Q8N3P4 1428 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 EGFRP00533 1210 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 LSP1P33241 339 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 KIZQ2M2Z5 673 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 MYSM1Q5VVJ2 828 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ANKS3Q6ZW76 656 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NCOA7Q8NI08 942 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SPATA16Q9BXB7 569 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 RPF1Q9H9Y2 349 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP32A7KAX9 2087 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NCAPD3P42695 1498 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 GRXCR2A6NFK2 248 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 APBA3O96018 575 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 STK3Q13188 491 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 VEPH1Q14D04 833 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ZSCAN26Q16670 478 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 MFSD14CQ5VZR4 134 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 KAZNQ674X7 775 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 WDR75Q8IWA0 830 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 KIAA2013Q8IYS2 634 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM11Q96F44 468 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 DNAI1Q9UI46 699 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM232C9JQI7 657 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TADA3O75528 432 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 STX2P32856 288 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 LAMC2Q13753 1193 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ATP2B3Q16720 1220 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP44Q17R89 818 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 RPAP2Q8IXW5 612 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 MICALL2Q8IY33 904 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 LARGE2Q8N3Y3 721 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF557Q8N988 423 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TTLL11Q8NHH1 800 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TTC17Q96AE7 1141 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 SYTL2Q9HCH5 934 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ATG2BQ96BY7 2078 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 EPRSP07814 1512 aaKnown RBP3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CUX1P39880 1505 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 AKT1P31749 480 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 NOS2P35228 1153 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP4P98171 946 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ABRQ12979 859 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CUL1Q13616 776 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF568Q3ZCX4 644 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ANKS6Q68DC2 871 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 PDZD8Q8NEN9 1154 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 FAR1Q8WVX9 515 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 CDHR1Q96JP9 859 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 TUFT1Q9NNX1 390 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 HMG20BQ9P0W2 317 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 ITGB1BP2Q9UKP3 347 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 HPCAL4Q9UM19 191 aa3.02□□□□□ -1.93
SCN1A-219ENST00000641575 IKBKBO14920 756 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 GUCY1B2O75343 617 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 BAG2O95816 211 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 HARSP12081 509 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FOSL2P15408 326 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CDC27P30260 824 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SARSP49591 514 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NT5C2P49902 561 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 DEUP1Q05D60 604 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TUBB2AQ13885 445 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 INAQ16352 499 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SLC9C1Q4G0N8 1177 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ZC2HC1CQ53FD0 456 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CYP26C1Q6V0L0 522 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TTC39CQ8N584 583 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ERO1AQ96HE7 468 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CABS1Q96KC9 395 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TUBB2BQ9BVA1 445 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TRMT112Q9UI30 125 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 NEMP1O14524 444 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 IGSF3O75054 1194 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ADD1P35611 737 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 BDH1Q02338 343 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TDRD12Q587J7 1177 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ANKRD20A8PQ5CZ79 823 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TMTC4Q5T4D3 741 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TMCO5AQ8N6Q1 288 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SEPT3Q9UH03 358 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TSKSQ9UJT2 592 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 FRMD4BQ9Y2L6 1034 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 WDR7Q9Y4E6 1490 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 MYO9AB2RTY4 2548 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 LRRC14BA6NHZ5 514 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TRAPPC3O43617 180 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 AKR1B10O60218 316 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ERCC1P07992 297 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 VCLP18206 1134 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 CENPCQ03188 943 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 ITGADQ13349 1161 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 HIST2H2ACQ16777 129 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 TRMT44Q8IYL2 757 aaKnown RBP3.01□□□□□ -1.93
SCN1A-219ENST00000641575 SUN3Q8TAQ9 357 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 PPP4R1Q8TF05 950 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 H2AFJQ9BTM1 129 aa3.01□□□□□ -1.93
SCN1A-219ENST00000641575 STX8Q9UNK0 236 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms