RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SCFD2Q8WU76 684 aa22.31■■□□□ 1.16
CLN3-260ENST00000637578 RMDN3Q96TC7 470 aa22.31■■□□□ 1.16
CLN3-260ENST00000637578 LZTS2Q9BRK4 669 aa22.31■■□□□ 1.16
CLN3-260ENST00000637578 UBE2OQ9C0C9 1292 aaKnown RBP22.31■■□□□ 1.16
CLN3-260ENST00000637578 CCDC69A6NI79 296 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 KIAA0355O15063 1070 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 NKRFO15226 690 aaKnown RBP eCLIP22.3■■□□□ 1.16
CLN3-260ENST00000637578 CABYRO75952 493 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 CFBP00751 764 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 CLTBP09497 229 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 CALM1P0DP23 149 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 CALM2P0DP24 149 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 CALM3P0DP25 149 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 FAAP100Q0VG06 881 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 ADCK5Q3MIX3 580 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 NFXL1Q6ZNB6 911 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 SLC43A3Q8NBI5 491 aa22.3■■□□□ 1.16
CLN3-260ENST00000637578 LBHD1Q9BQE6 289 aaPredicted RBP22.3■■□□□ 1.16
CLN3-260ENST00000637578 BAZ2BQ9UIF8 2168 aaKnown RBP22.3■■□□□ 1.16
CLN3-260ENST00000637578 A0A0U1RQG5 324 aaPredicted RBP22.29■■□□□ 1.16
CLN3-260ENST00000637578 ARVCFO00192 962 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 ZEB2O60315 1214 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 PQBP1O60828 265 aaKnown RBP22.29■■□□□ 1.16
CLN3-260ENST00000637578 GNAQP50148 359 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 TDHQ8IZJ6 230 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 LRRC2Q9BYS8 371 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 PXMP2Q9NR77 195 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 KRT32Q14532 448 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 CCDC62Q6P9F0 684 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 CXCL17Q6UXB2 119 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 DHX32Q7L7V1 743 aaKnown RBP22.29■■□□□ 1.16
CLN3-260ENST00000637578 PRDM5Q9NQX1 630 aaPredicted RBP22.29■■□□□ 1.16
CLN3-260ENST00000637578 SLC12A7Q9Y666 1083 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 LAMA3Q16787 3333 aa22.29■■□□□ 1.16
CLN3-260ENST00000637578 MROH7Q68CQ1 1323 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 DCDC2CA8MYV0 355 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 ITGB8P26012 769 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 PPP2R5BQ15173 497 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 STXBP2Q15833 593 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 ARHGEF16Q5VV41 709 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 SRBD1Q8N5C6 995 aaKnown RBP22.28■■□□□ 1.16
CLN3-260ENST00000637578 LTBP2Q14767 1821 aa22.28■■□□□ 1.16
CLN3-260ENST00000637578 GRIN2DO15399 1336 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 ARIH2O95376 493 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 NR3C2P08235 984 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 TTLL4Q14679 1199 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 LRIT3Q3SXY7 679 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 FANCBQ8NB91 859 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 VTI1AQ96AJ9 217 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 RRP36Q96EU6 259 aaKnown RBP22.27■■□□□ 1.16
CLN3-260ENST00000637578 SEZ6LQ9BYH1 1024 aa22.27■■□□□ 1.16
CLN3-260ENST00000637578 EIF3JO75822 258 aaKnown RBP22.26■■□□□ 1.15
CLN3-260ENST00000637578 PLEKHA8P1O95397 391 aa22.26■■□□□ 1.15
CLN3-260ENST00000637578 TXNP10599 105 aaKnown RBP22.26■■□□□ 1.15
CLN3-260ENST00000637578 EIF2AK2P19525 551 aaKnown RBP22.26■■□□□ 1.15
CLN3-260ENST00000637578 HOXA13P31271 388 aaPredicted RBP22.26■■□□□ 1.15
CLN3-260ENST00000637578 HSPA4P34932 840 aa22.26■■□□□ 1.15
CLN3-260ENST00000637578 FAM126BQ8IXS8 530 aa22.26■■□□□ 1.15
CLN3-260ENST00000637578 BADQ92934 168 aa22.26■■□□□ 1.15
CLN3-260ENST00000637578 TMEM39AQ9NV64 488 aa22.26■■□□□ 1.15
CLN3-260ENST00000637578 TBX21Q9UL17 535 aa22.26■■□□□ 1.15
CLN3-260ENST00000637578 A6NJR5 290 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 GCOM1H8Y6P7 765 aaPredicted RBP22.25■■□□□ 1.15
CLN3-260ENST00000637578 SOX1O00570 391 aaPredicted RBP22.25■■□□□ 1.15
CLN3-260ENST00000637578 HMGB1P09429 215 aaKnown RBP22.25■■□□□ 1.15
CLN3-260ENST00000637578 POLR2MP0CAP2 368 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 RXRAP19793 462 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 CPT1AP50416 773 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 OR6J1Q8NGC5 347 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 COPS5Q92905 334 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 PDCD2LQ9BRP1 358 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 CD4P01730 458 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 PURAQ00577 322 aaKnown RBP22.25■■□□□ 1.15
CLN3-260ENST00000637578 ITGA7Q13683 1181 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 APOA5Q6Q788 366 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 POLR3EQ9NVU0 708 aa22.25■■□□□ 1.15
CLN3-260ENST00000637578 REC8O95072 547 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 SEPT14Q6ZU15 432 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 TMTC3Q6ZXV5 915 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 VSIG10LQ86VR7 867 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 PIBF1Q8WXW3 757 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 TCEANC2Q96MN5 208 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 BRPF3Q9ULD4 1205 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 SZT2Q5T011 3432 aa22.24■■□□□ 1.15
CLN3-260ENST00000637578 EPB41L2O43491 1005 aaKnown RBP22.23■■□□□ 1.15
CLN3-260ENST00000637578 RGS20O76081 388 aa22.23■■□□□ 1.15
CLN3-260ENST00000637578 PGM5Q15124 567 aa22.23■■□□□ 1.15
CLN3-260ENST00000637578 C8orf34Q49A92 452 aa22.23■■□□□ 1.15
CLN3-260ENST00000637578 CMTR1Q8N1G2 835 aaKnown RBP22.23■■□□□ 1.15
CLN3-260ENST00000637578 SEC63Q9UGP8 760 aaKnown RBP22.23■■□□□ 1.15
CLN3-260ENST00000637578 DDX41Q9UJV9 622 aaKnown RBP22.23■■□□□ 1.15
CLN3-260ENST00000637578 FRMPD4Q14CM0 1322 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 KPNA6O60684 536 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 RAG1P15918 1043 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 LY6KQ17RY6 165 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 MICU3Q86XE3 530 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 RAB11FIP4Q86YS3 637 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 SNX14Q9Y5W7 946 aa22.22■■□□□ 1.15
CLN3-260ENST00000637578 PIK3CDO00329 1044 aa22.21■■□□□ 1.15
CLN3-260ENST00000637578 TIMP1P01033 207 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms