RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 KCNQ1P51787 676 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 TNFAIP2Q03169 654 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 SLC30A10Q6XR72 485 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 NFXL1Q6ZNB6 911 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 STOX1Q6ZVD7 989 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 ZNF365Q70YC5 407 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 C16orf59Q7L2K0 433 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 CATIPQ7Z7H3 387 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 FBXO11Q86XK2 927 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 CLEC4DQ8WXI8 215 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 GLT1D1Q96MS3 346 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 LSG1Q9H089 658 aaKnown RBP13.53□□□□□ -0.24
CLN3-257ENST00000637110 DDX49Q9Y6V7 483 aaKnown RBP13.53□□□□□ -0.24
CLN3-257ENST00000637110 B4DLN1 442 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 TLR3O15455 904 aaKnown RBP13.52□□□□□ -0.25
CLN3-257ENST00000637110 GTPBP6O43824 516 aaPredicted RBP13.52□□□□□ -0.25
CLN3-257ENST00000637110 ALDH5A1P51649 535 aaPredicted RBP13.52□□□□□ -0.25
CLN3-257ENST00000637110 MRPL12P52815 198 aaKnown RBP13.52□□□□□ -0.25
CLN3-257ENST00000637110 QRICH1Q2TAL8 776 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 PPP2R2DQ66LE6 453 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 FBXO16Q8IX29 292 aaPredicted RBP13.52□□□□□ -0.25
CLN3-257ENST00000637110 STAG2Q8N3U4 1231 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 AP5M1Q9H0R1 490 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 COG5Q9UP83 839 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 ELP1O95163 1332 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 ABCB11O95342 1321 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 SYNRGQ9UMZ2 1314 aa13.52□□□□□ -0.25
CLN3-257ENST00000637110 SLC27A2O14975 620 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 PRC1O43663 620 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 ADAMTS4O75173 837 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 ACRP10323 421 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 MCM5P33992 734 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 RPS6P62753 249 aaKnown RBP13.51□□□□□ -0.25
CLN3-257ENST00000637110 PDE4DQ08499 809 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 KCNA10Q16322 511 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 GNASQ5JWF2 1037 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 RNF20Q5VTR2 975 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 CREB3L3Q68CJ9 461 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 HOMER1Q86YM7 354 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 MCF2L2Q86YR7 1114 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 PCSK9Q8NBP7 692 aaKnown RBP13.51□□□□□ -0.25
CLN3-257ENST00000637110 AMNQ9BXJ7 453 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 JMJD4Q9H9V9 463 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 SENP2Q9HC62 589 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 IL23AQ9NPF7 189 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 MRPL11Q9Y3B7 192 aaKnown RBP13.51□□□□□ -0.25
CLN3-257ENST00000637110 CHD7Q9P2D1 2997 aa13.51□□□□□ -0.25
CLN3-257ENST00000637110 LRRC37A2A6NM11 1700 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.5□□□□□ -0.25
CLN3-257ENST00000637110 CCDC69A6NI79 296 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 DYNC1LI2O43237 492 aaPredicted RBP13.5□□□□□ -0.25
CLN3-257ENST00000637110 FGBP02675 491 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 GRM4Q14833 912 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 IQSEC1Q6DN90 963 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 MB21D2Q8IYB1 491 aaPredicted RBP13.5□□□□□ -0.25
CLN3-257ENST00000637110 CTCFLQ8NI51 663 aaPredicted RBP13.5□□□□□ -0.25
CLN3-257ENST00000637110 PIBF1Q8WXW3 757 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 SNX27Q96L92 541 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 KATNBL1Q9H079 304 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 VTA1Q9NP79 307 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 PDGFCQ9NRA1 345 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 MAD2L2Q9UI95 211 aa13.5□□□□□ -0.25
CLN3-257ENST00000637110 PRRC2BQ5JSZ5 2229 aaKnown RBP13.49□□□□□ -0.25
CLN3-257ENST00000637110 REV3LO60673 3130 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 ASTN1O14525 1302 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 A0A0U1RQG5 324 aaPredicted RBP13.49□□□□□ -0.25
CLN3-257ENST00000637110 PALM3A6NDB9 673 aaPredicted RBP13.49□□□□□ -0.25
CLN3-257ENST00000637110 MYADML2A6NDP7 307 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 ADCY6O43306 1168 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 ZEB2O60315 1214 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 SMPD1P17405 629 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 GJA9P57773 515 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 ANTXR2P58335 489 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 IRX5P78411 483 aaPredicted RBP13.49□□□□□ -0.25
CLN3-257ENST00000637110 BEX3Q00994 111 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 TLK2Q86UE8 772 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 KLHDC9Q8NEP7 349 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 IGDCC4Q8TDY8 1250 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 TBC1D5Q92609 795 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 PPP1R12CQ9BZL4 782 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 YBX2Q9Y2T7 364 aaKnown RBP13.49□□□□□ -0.25
CLN3-257ENST00000637110 MYH6P13533 1939 aa13.49□□□□□ -0.25
CLN3-257ENST00000637110 ZBTB5O15062 677 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 CFBP00751 764 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 ASGR1P07306 291 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 KIF5BP33176 963 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 CDK7P50613 346 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 TRAF1Q13077 416 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 NECTIN1Q15223 517 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 TAPT1Q6NXT6 567 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 ZNF654Q8IZM8 581 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 TMTC2Q8N394 836 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 RGS22Q8NE09 1264 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 DNERQ8NFT8 737 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 TMEM87BQ96K49 555 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 PIGSQ96S52 555 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 MYL10Q9BUA6 226 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 WDR11Q9BZH6 1224 aa13.48□□□□□ -0.25
CLN3-257ENST00000637110 GPHNQ9NQX3 736 aaPredicted RBP13.48□□□□□ -0.25
CLN3-257ENST00000637110 PCDHA11Q9Y5I1 949 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms