RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DDX25Q9UHL0 483 aaKnown RBP20.89■□□□□ 0.93
CLN3-254ENST00000637050 CIITAP33076 1130 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 IRX3P78415 501 aaPredicted RBP20.88■□□□□ 0.93
CLN3-254ENST00000637050 CALCRLQ16602 461 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 LRSAM1Q6UWE0 723 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 SYMPKQ92797 1274 aaKnown RBP20.88■□□□□ 0.93
CLN3-254ENST00000637050 EPSTI1Q96J88 318 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 ASCC2Q9H1I8 757 aaPredicted RBP20.88■□□□□ 0.93
CLN3-254ENST00000637050 EHMT1Q9H9B1 1298 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 RNF146Q9NTX7 359 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 TRPM7Q96QT4 1865 aa20.88■□□□□ 0.93
CLN3-254ENST00000637050 CTAGE5O15320 804 aa20.87■□□□□ 0.93
CLN3-254ENST00000637050 STAT3P40763 770 aa20.87■□□□□ 0.93
CLN3-254ENST00000637050 PABPC4Q13310 644 aaKnown RBP eCLIP20.87■□□□□ 0.93
CLN3-254ENST00000637050 MS4A4AQ96JQ5 239 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 MAF1Q9H063 256 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 COL20A1Q9P218 1284 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 RPTORQ8N122 1335 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 CETPP11597 493 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 GTF2A2P52657 109 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 HERVK_113P62684 666 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 Q4G0T1 1027 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 GAS2L3Q86XJ1 694 aa20.86■□□□□ 0.93
CLN3-254ENST00000637050 SYTL5Q8TDW5 730 aaPredicted RBP20.86■□□□□ 0.93
CLN3-254ENST00000637050 OSBPP22059 807 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 RPS6P62753 249 aaKnown RBP20.85■□□□□ 0.93
CLN3-254ENST00000637050 SPRYD7Q5W111 196 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 RNF207Q6ZRF8 634 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 HAS1Q92839 578 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 AK8Q96MA6 479 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 KCNMB3Q9NPA1 279 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 BTBD7Q9P203 1132 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 RABGAP1Q9Y3P9 1069 aa20.85■□□□□ 0.93
CLN3-254ENST00000637050 FAM86B1E9PN63 330 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 POLR2DO15514 142 aaKnown RBP20.84■□□□□ 0.93
CLN3-254ENST00000637050 FAM86B2P0C5J1 330 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 ZBTB48P10074 688 aaPredicted RBP20.84■□□□□ 0.93
CLN3-254ENST00000637050 FXR2P51116 673 aaKnown RBP eCLIP20.84■□□□□ 0.93
CLN3-254ENST00000637050 LONRF3Q496Y0 759 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 IGSF22Q8N9C0 903 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 LENG9Q96B70 501 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 SDF4Q9BRK5 362 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 FUCA2Q9BTY2 467 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 FRMPD4Q14CM0 1322 aa20.84■□□□□ 0.93
CLN3-254ENST00000637050 A0A087X0B3 334 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 FSD2A1L4K1 749 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 TXKP42681 527 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 PLS1Q14651 629 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 SLC30A10Q6XR72 485 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 KRBA2Q6ZNG9 492 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 RIOX2Q8IUF8 465 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 CKAP2LQ8IYA6 745 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 ELOA2Q8IYF1 753 aaPredicted RBP20.83■□□□□ 0.93
CLN3-254ENST00000637050 ACAD9Q9H845 621 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 GPBP1L1Q9HC44 474 aaPredicted RBP20.83■□□□□ 0.93
CLN3-254ENST00000637050 SLC45A1Q9Y2W3 748 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 PASKQ96RG2 1323 aa20.83■□□□□ 0.93
CLN3-254ENST00000637050 TBX3O15119 743 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 TECP42680 631 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 HUNKP57058 714 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 NSMFQ6X4W1 530 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 CHST13Q8NET6 341 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 PANK2Q9BZ23 570 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 CCSER1Q9C0I3 900 aa20.83■□□□□ 0.92
CLN3-254ENST00000637050 IGLV3-22A0A075B6J6 115 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 ACTN4O43707 911 aaKnown RBP20.82■□□□□ 0.92
CLN3-254ENST00000637050 CNMDO75829 334 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 ZNF76P36508 570 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 BAATQ14032 418 aaPredicted RBP20.82■□□□□ 0.92
CLN3-254ENST00000637050 PDIA5Q14554 519 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 TMEM266Q2M3C6 531 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 PRR16Q569H4 304 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 PDILTQ8N807 584 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 ETNPPLQ8TBG4 499 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 PYM1Q9BRP8 204 aaKnown RBP20.82■□□□□ 0.92
CLN3-254ENST00000637050 SPATC1LQ9H0A9 340 aa20.82■□□□□ 0.92
CLN3-254ENST00000637050 CCL15-CCL14A0A0B4J2E2 113 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 PP2D1A8MPX8 630 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 CDC25AP30304 524 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 TXLNAP40222 546 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 UBXN2AP68543 259 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 MKRN3Q13064 507 aaKnown RBP20.81■□□□□ 0.92
CLN3-254ENST00000637050 CCL15Q16663 113 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 CNNM3Q8NE01 707 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 BRI3BPQ8WY22 251 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 TAAR1Q96RJ0 339 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 TSPY26PQ9H489 355 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 TTC12Q9H892 705 aaPredicted RBP20.81■□□□□ 0.92
CLN3-254ENST00000637050 USP25Q9UHP3 1055 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 SERTAD1Q9UHV2 236 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 PNMA3Q9UL41 463 aa20.81■□□□□ 0.92
CLN3-254ENST00000637050 GOLGA6L3A6NEY3 463 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 KIF3CO14782 793 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 PEX10O60683 326 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 ANKRD23Q86SG2 305 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 SLFN12Q8IYM2 578 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 CYP2W1Q8TAV3 490 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 FAM20AQ96MK3 541 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 RAB34Q9BZG1 259 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 A1CFQ9NQ94 594 aaKnown RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms