RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ZNF592Q92610 1267 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 CTAGE1Q96RT6 745 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 PRR12Q9ULL5 1215 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 SMCHD1A6NHR9 2005 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 RIOK3O14730 519 aaKnown RBP17.55■□□□□ 0.4
CLN3-251ENST00000636853 AMPD3Q01432 767 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 FILIP1LQ4L180 1135 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 DALRD3Q5D0E6 543 aaKnown RBP17.55■□□□□ 0.4
CLN3-251ENST00000636853 KRT79Q5XKE5 535 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 CEP135Q66GS9 1140 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 BTNL9Q6UXG8 535 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 SV2BQ7L1I2 683 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 HPS3Q969F9 1004 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 EXOC1Q9NV70 894 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 PCDHA12Q9UN75 941 aa17.55■□□□□ 0.4
CLN3-251ENST00000636853 WNT10BO00744 389 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 ZYXQ15942 572 aaKnown RBP17.54■□□□□ 0.4
CLN3-251ENST00000636853 KCNK18Q7Z418 384 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 TMEM139Q8IV31 216 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 MTMR14Q8NCE2 650 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 PPP1R13BQ96KQ4 1090 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 VPS16Q9H269 839 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 LIMA1Q9UHB6 759 aaKnown RBP17.54■□□□□ 0.4
CLN3-251ENST00000636853 TMX2Q9Y320 296 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 MYMKA6NI61 221 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 KCNJ18B7U540 433 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 FCER1AP12319 257 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 STK4Q13043 487 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 STIM1Q13586 685 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 KCNJ12Q14500 433 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 ECM1Q16610 540 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 TCP11X2Q5H9J9 407 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 FAM83BQ5T0W9 1011 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 CIAPIN1Q6FI81 312 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 LARP4BQ92615 738 aaKnown RBP17.54■□□□□ 0.4
CLN3-251ENST00000636853 CCDC47Q96A33 483 aaKnown RBP17.54■□□□□ 0.4
CLN3-251ENST00000636853 TAOK3Q9H2K8 898 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 TAB2Q9NYJ8 693 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 STK17AQ9UEE5 414 aa17.54■□□□□ 0.4
CLN3-251ENST00000636853 PSMA7O14818 248 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 PBX1P40424 430 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 KCNJ6P48051 423 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 USP11P51784 963 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 STAT2P52630 851 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 FKBP1CQ5VVH2 108 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 TSC1Q92574 1164 aa17.53■□□□□ 0.4
CLN3-251ENST00000636853 PSDA5PKW4 1024 aaPredicted RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 H7C1D1 291 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 OPLAHO14841 1288 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 N4BP3O15049 544 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 HOXA13P31271 388 aaPredicted RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 COPB1P53618 953 aaKnown RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 ARHGAP4P98171 946 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 AP3B2Q13367 1082 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 DYMQ7RTS9 669 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 CCDC84Q86UT8 332 aaPredicted RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 IRF2BP1Q8IU81 584 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 CPLX3Q8WVH0 158 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 RAD54LQ92698 747 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 ZBED3Q96IU2 234 aaPredicted RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 BAG1Q99933 345 aaPredicted RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 GOPCQ9HD26 462 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 MYOZ2Q9NPC6 264 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 RBL2Q08999 1139 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 SEMA3FQ13275 785 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 FAM83AQ86UY5 434 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 JDP2Q8WYK2 163 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 TRIM47Q96LD4 638 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 NAP1L4Q99733 375 aaKnown RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 GLIS2Q9BZE0 524 aaPredicted RBP17.52■□□□□ 0.4
CLN3-251ENST00000636853 SYNPO2Q9UMS6 1093 aa17.52■□□□□ 0.4
CLN3-251ENST00000636853 LRRC10BA6NIK2 292 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 SPAG1Q07617 926 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 TMEM119Q4V9L6 283 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 TTI2Q6NXR4 508 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 SAMD1Q6SPF0 538 aaPredicted RBP17.51■□□□□ 0.39
CLN3-251ENST00000636853 CRYGNQ8WXF5 182 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 EEF2KMTQ96G04 330 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 SRRTQ9BXP5 876 aaKnown RBP17.51■□□□□ 0.39
CLN3-251ENST00000636853 KCNMB3Q9NPA1 279 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 PGAP2Q9UHJ9 254 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 UTRNP46939 3433 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 CYP3A7-CYP3A51PA0A087WV96 503 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 SPDYE3A6NKU9 549 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 NFKBIEO00221 500 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 TBC1D12O60347 775 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 EGFRP00533 1210 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 CYP3A7P24462 503 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 POLD1P28340 1107 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 CAP2P40123 477 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 PRR16Q569H4 304 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 KIAA0895Q8NCT3 520 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 ANKRD20A12PQ8NF67 263 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 DHTKD1Q96HY7 919 aaPredicted RBP17.51■□□□□ 0.39
CLN3-251ENST00000636853 SLC39A2Q9NP94 309 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 FER1L6Q2WGJ9 1857 aa17.51■□□□□ 0.39
CLN3-251ENST00000636853 AKR1B15C9JRZ8 316 aaPredicted RBP17.5■□□□□ 0.39
CLN3-251ENST00000636853 STAT3P40763 770 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 CCDC174Q6PII3 467 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 PPFIBP1Q86W92 1011 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms