RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DSG3P32926 999 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 COPB2P35606 906 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 GRIN1Q05586 938 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 PABPC4Q13310 644 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLN3-248ENST00000636355 COG2Q14746 738 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 POSTNQ15063 836 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 E2F4Q16254 413 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 CT47A1Q5JQC4 288 aaPredicted RBP11.95□□□□□ -0.5
CLN3-248ENST00000636355 PRAMEF18Q5VWM3 479 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 CCDC174Q6PII3 467 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 USP17L6PQ6QN14 398 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 CATSPERGQ6ZRH7 1159 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 NIPA1Q7RTP0 329 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 PRRT2Q7Z6L0 340 aaPredicted RBP11.95□□□□□ -0.5
CLN3-248ENST00000636355 CKAP2LQ8IYA6 745 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 REPS2Q8NFH8 660 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 SPATA20Q8TB22 786 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 FAM20AQ96MK3 541 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 BPIFA3Q9BQP9 254 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 TEX13BQ9BXU2 312 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 GTPBP4Q9BZE4 634 aaKnown RBP11.95□□□□□ -0.5
CLN3-248ENST00000636355 HOXC10Q9NYD6 342 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 STK17AQ9UEE5 414 aa11.95□□□□□ -0.5
CLN3-248ENST00000636355 LCTP09848 1927 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 SLC37A4O43826 429 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 SMC2O95347 1197 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 TDP2O95551 362 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 UBA7P41226 1012 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 IL17AQ16552 155 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 TPRNQ4KMQ1 711 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 EAPPQ56P03 285 aaPredicted RBP11.94□□□□□ -0.5
CLN3-248ENST00000636355 LDLRAD1Q5T700 205 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 HAUS3Q68CZ6 603 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 XRRA1Q6P2D8 792 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLN3-248ENST00000636355 SH3RF1Q7Z6J0 888 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 GTF3C2Q8WUA4 911 aaPredicted RBP11.94□□□□□ -0.5
CLN3-248ENST00000636355 RBSNQ9H1K0 784 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 DACH1Q9UI36 760 aa11.94□□□□□ -0.5
CLN3-248ENST00000636355 ZNF214Q9UL59 606 aaPredicted RBP11.94□□□□□ -0.5
CLN3-248ENST00000636355 SPDYE16A6NNV3 312 aaPredicted RBP11.93□□□□□ -0.5
CLN3-248ENST00000636355 IRF6O14896 467 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 EDIL3O43854 480 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 CFBP00751 764 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 BCRP11274 1271 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 XRCC6P12956 609 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLN3-248ENST00000636355 STAT6P42226 847 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 MDM2Q00987 491 aaPredicted RBP11.93□□□□□ -0.5
CLN3-248ENST00000636355 LONRF3Q496Y0 759 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 HYIQ5T013 277 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 FASTKD5Q7L8L6 764 aaKnown RBP11.93□□□□□ -0.5
CLN3-248ENST00000636355 ETNPPLQ8TBG4 499 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 CLEC4DQ8WXI8 215 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 CALML4Q96GE6 196 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 EPSTI1Q96J88 318 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 GSDMAQ96QA5 445 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 NT5C3AQ9H0P0 336 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 AGTPBP1Q9UPW5 1226 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 LRRC37A2A6NM11 1700 aa11.93□□□□□ -0.5
CLN3-248ENST00000636355 A0A087X0B3 334 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 ZNF165P49910 485 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 NLRP12P59046 1061 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 SNAP25P60880 206 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 CCDC173Q0VFZ6 552 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 ANO6Q4KMQ2 910 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 PCNX4Q63HM2 1172 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 PDXDC2PQ6P474 469 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 USP49Q70CQ1 688 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 CABP7Q86V35 215 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 SMARCE1Q969G3 411 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 LENG9Q96B70 501 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 DHX58Q96C10 678 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 ATG4CQ96DT6 458 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 RMND1Q9NWS8 449 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 LRWD1Q9UFC0 647 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 FBXO40Q9UH90 709 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 SLC45A1Q9Y2W3 748 aa11.92□□□□□ -0.5
CLN3-248ENST00000636355 PFASO15067 1338 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 IGLV3-22A0A075B6J6 115 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 GTPBP6O43824 516 aaPredicted RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 MUTP22033 750 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 HOXA13P31271 388 aaPredicted RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 SARSP49591 514 aaKnown RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 SNAPC2Q13487 334 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 SPECC1Q5M775 1068 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 RRAGBQ5VZM2 374 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 KRT79Q5XKE5 535 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 CNNM4Q6P4Q7 775 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 PDILTQ8N807 584 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 MLKLQ8NB16 471 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 CHST13Q8NET6 341 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 RASSF8Q8NHQ8 419 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 ERMNQ8TAM6 284 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 HAS1Q92839 578 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 OTUD5Q96G74 571 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 AGBL1Q96MI9 1066 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 P2RX7Q99572 595 aaKnown RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 LRRC27Q9C0I9 530 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 ACAD9Q9H845 621 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms