RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 SH3RF1Q7Z6J0 888 aa20.95■□□□□ 0.94
CLN3-243ENST00000635973 CCDC82Q8N4S0 544 aa20.95■□□□□ 0.94
CLN3-243ENST00000635973 CYP39A1Q9NYL5 469 aa20.95■□□□□ 0.94
CLN3-243ENST00000635973 TRIM43BA6NCK2 446 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 SOWAHBA6NEL2 793 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 CYTH3O43739 400 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 CST5P28325 142 aaPredicted RBP20.94■□□□□ 0.94
CLN3-243ENST00000635973 SMARCA1P28370 1054 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 RBM25P49756 843 aaKnown RBP20.94■□□□□ 0.94
CLN3-243ENST00000635973 GJA9P57773 515 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 ANKRD1Q15327 319 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 SRBD1Q8N5C6 995 aaKnown RBP20.94■□□□□ 0.94
CLN3-243ENST00000635973 TRIM43Q96BQ3 446 aaPredicted RBP20.94■□□□□ 0.94
CLN3-243ENST00000635973 MTMR8Q96EF0 704 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 LARP6Q9BRS8 491 aaKnown RBP20.94■□□□□ 0.94
CLN3-243ENST00000635973 AMNQ9BXJ7 453 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 ADD3Q9UEY8 706 aaKnown RBP20.94■□□□□ 0.94
CLN3-243ENST00000635973 ABCB11O95342 1321 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 MROH7Q68CQ1 1323 aa20.94■□□□□ 0.94
CLN3-243ENST00000635973 BAZ2BQ9UIF8 2168 aaKnown RBP20.93■□□□□ 0.94
CLN3-243ENST00000635973 PNMA6FA0A0J9YX94 578 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 MYADML2A6NDP7 307 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 ASGR1P07306 291 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 TRAF1Q13077 416 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 PPP2R5BQ15173 497 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 SLC35G1Q2M3R5 365 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 TOX2Q96NM4 488 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 BACH2Q9BYV9 841 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 AP5M1Q9H0R1 490 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 UPF3AQ9H1J1 476 aaKnown RBP20.93■□□□□ 0.94
CLN3-243ENST00000635973 MYH6P13533 1939 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 ELP1O95163 1332 aa20.93■□□□□ 0.94
CLN3-243ENST00000635973 PTPDC1A2A3K4 754 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 NFIBO00712 420 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 AK2P54819 239 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 CCT2P78371 535 aaKnown RBP20.92■□□□□ 0.94
CLN3-243ENST00000635973 SHHQ15465 462 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 CCSAPQ6IQ19 270 aaPredicted RBP20.92■□□□□ 0.94
CLN3-243ENST00000635973 EEPD1Q7L9B9 569 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 ANKRD33Q7Z3H0 272 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 MPHOSPH6Q99547 160 aaKnown RBP20.92■□□□□ 0.94
CLN3-243ENST00000635973 MRPL11Q9Y3B7 192 aaKnown RBP20.92■□□□□ 0.94
CLN3-243ENST00000635973 COL6A3P12111 3177 aa20.92■□□□□ 0.94
CLN3-243ENST00000635973 DLL1O00548 723 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 KIAA0355O15063 1070 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 ADCY6O43306 1168 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 PDIA3P30101 505 aaKnown RBP20.91■□□□□ 0.94
CLN3-243ENST00000635973 CDC27P30260 824 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 EVCP57679 992 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 STK3Q13188 491 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 BAATQ14032 418 aaPredicted RBP20.91■□□□□ 0.94
CLN3-243ENST00000635973 NID2Q14112 1375 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 CNTNAP5Q8WYK1 1306 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 KATNBL1Q9H079 304 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 PCDHA1Q9Y5I3 950 aa20.91■□□□□ 0.94
CLN3-243ENST00000635973 A0A0U1RQG5 324 aaPredicted RBP20.9■□□□□ 0.94
CLN3-243ENST00000635973 TLR3O15455 904 aaKnown RBP20.9■□□□□ 0.94
CLN3-243ENST00000635973 ZEB2O60315 1214 aa20.9■□□□□ 0.94
CLN3-243ENST00000635973 ADD1P35611 737 aaKnown RBP20.9■□□□□ 0.94
CLN3-243ENST00000635973 IRX5P78411 483 aaPredicted RBP20.9■□□□□ 0.94
CLN3-243ENST00000635973 IQSEC1Q6DN90 963 aa20.9■□□□□ 0.94
CLN3-243ENST00000635973 TLK2Q86UE8 772 aa20.9■□□□□ 0.94
CLN3-243ENST00000635973 CLEC4DQ8WXI8 215 aa20.9■□□□□ 0.94
CLN3-243ENST00000635973 ZNF274Q96GC6 653 aaPredicted RBP20.9■□□□□ 0.94
CLN3-243ENST00000635973 TBC1D32Q96NH3 1257 aa20.9■□□□□ 0.94
CLN3-243ENST00000635973 ALDH8A1Q9H2A2 487 aaPredicted RBP20.9■□□□□ 0.94
CLN3-243ENST00000635973 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.89■□□□□ 0.93
CLN3-243ENST00000635973 hCG_1642624A0A1W2PR95 340 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 CPLX1O14810 134 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 PPP1R11O60927 126 aaPredicted RBP20.89■□□□□ 0.93
CLN3-243ENST00000635973 CALML3P27482 149 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 BEX3Q00994 111 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 FPGSQ05932 587 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 FAAP100Q0VG06 881 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 C9orf50Q5SZB4 431 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 RNF207Q6ZRF8 634 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 MCF2L2Q86YR7 1114 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 FBXO16Q8IX29 292 aaPredicted RBP20.89■□□□□ 0.93
CLN3-243ENST00000635973 SLKQ9H2G2 1235 aaPredicted RBP20.89■□□□□ 0.93
CLN3-243ENST00000635973 NCOA5Q9HCD5 579 aaKnown RBP20.89■□□□□ 0.93
CLN3-243ENST00000635973 VTA1Q9NP79 307 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 FAM217BQ9NTX9 383 aaPredicted RBP20.89■□□□□ 0.93
CLN3-243ENST00000635973 MTMR10Q9NXD2 777 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 STXBP5LQ9Y2K9 1186 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 LRRC37A2A6NM11 1700 aa20.89■□□□□ 0.93
CLN3-243ENST00000635973 LCTP09848 1927 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 ARVCFO00192 962 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 DYNC1LI2O43237 492 aaPredicted RBP20.88■□□□□ 0.93
CLN3-243ENST00000635973 AKAP17AQ02040 695 aaKnown RBP20.88■□□□□ 0.93
CLN3-243ENST00000635973 RABEP1Q15276 862 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 FSCN1Q16658 493 aaKnown RBP20.88■□□□□ 0.93
CLN3-243ENST00000635973 ZNF697Q5TEC3 545 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 CPLX2Q6PUV4 134 aaKnown RBP20.88■□□□□ 0.93
CLN3-243ENST00000635973 HEATR3Q7Z4Q2 680 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 KIF2CQ99661 725 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 TPCN1Q9ULQ1 816 aa20.88■□□□□ 0.93
CLN3-243ENST00000635973 LOC102724159A0A0B4J2E5 919 aa20.87■□□□□ 0.93
CLN3-243ENST00000635973 B4DLN1 442 aa20.87■□□□□ 0.93
CLN3-243ENST00000635973 CABYRO75952 493 aa20.87■□□□□ 0.93
CLN3-243ENST00000635973 SMPD1P17405 629 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms