RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 PIK3CDO00329 1044 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 MARCH6O60337 910 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 KIAA1755Q5JYT7 1200 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SPECC1LQ69YQ0 1117 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 FAM160B2Q86V87 743 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SPICE1Q8N0Z3 855 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SGIP1Q9BQI5 828 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 KCNMB3Q9NPA1 279 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 GINM1Q9NU53 330 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 BLOC1S4Q9NUP1 217 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 PCDHA12Q9UN75 941 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 H7C1D1 291 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SREBF1P36956 1147 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SNAP25P60880 206 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 ARHGAP4P98171 946 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 USH1GQ495M9 461 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 FILIP1LQ4L180 1135 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 COBLL1Q53SF7 1204 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 HYIQ5T013 277 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 FAM83BQ5T0W9 1011 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 CNNM4Q6P4Q7 775 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 MIGA2Q7L4E1 593 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 CDAN1Q8IWY9 1227 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SLFN12Q8IYM2 578 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 SNX29Q8TEQ0 813 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 DHTKD1Q96HY7 919 aaPredicted RBP24.76■■□□□ 1.55
PNKP-220ENST00000627232 EXOC1Q9NV70 894 aa24.76■■□□□ 1.55
PNKP-220ENST00000627232 ADD3Q9UEY8 706 aaKnown RBP24.76■■□□□ 1.55
PNKP-220ENST00000627232 LIMA1Q9UHB6 759 aaKnown RBP24.76■■□□□ 1.55
PNKP-220ENST00000627232 POTEMA6NI47 508 aa24.75■■□□□ 1.55
PNKP-220ENST00000627232 SPDYE3A6NKU9 549 aa24.75■■□□□ 1.55
PNKP-220ENST00000627232 TBX3O15119 743 aa24.75■■□□□ 1.55
PNKP-220ENST00000627232 Q4G0T1 1027 aa24.75■■□□□ 1.55
PNKP-220ENST00000627232 LARP4BQ92615 738 aaKnown RBP24.75■■□□□ 1.55
PNKP-220ENST00000627232 RAD54LQ92698 747 aa24.75■■□□□ 1.55
PNKP-220ENST00000627232 RANBP17Q9H2T7 1088 aaKnown RBP24.75■■□□□ 1.55
PNKP-220ENST00000627232 KDM3AQ9Y4C1 1321 aa24.75■■□□□ 1.55
PNKP-220ENST00000627232 PVALEFA0A1B0GWK0 134 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 LRRC10BA6NIK2 292 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 PSMA7O14818 248 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 ASIC1P78348 528 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 RASA3Q14644 834 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 ANKRD20A12PQ8NF67 263 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 TMX1Q9H3N1 280 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 BCS1LQ9Y276 419 aa24.74■■□□□ 1.55
PNKP-220ENST00000627232 SHTN1A0MZ66 631 aa24.73■■□□□ 1.55
PNKP-220ENST00000627232 CIITAP33076 1130 aa24.73■■□□□ 1.55
PNKP-220ENST00000627232 PDE4DQ08499 809 aa24.73■■□□□ 1.55
PNKP-220ENST00000627232 NOC3LQ8WTT2 800 aaKnown RBP24.73■■□□□ 1.55
PNKP-220ENST00000627232 NT5C3AQ9H0P0 336 aa24.73■■□□□ 1.55
PNKP-220ENST00000627232 PPP1R1BQ9UD71 204 aaPredicted RBP24.73■■□□□ 1.55
PNKP-220ENST00000627232 FEM1BQ9UK73 627 aa24.73■■□□□ 1.55
PNKP-220ENST00000627232 OPLAHO14841 1288 aa24.72■■□□□ 1.55
PNKP-220ENST00000627232 CYP3A4P08684 503 aa24.72■■□□□ 1.55
PNKP-220ENST00000627232 CCAR2Q8N163 923 aaKnown RBP24.72■■□□□ 1.55
PNKP-220ENST00000627232 P2RX7Q99572 595 aaKnown RBP24.72■■□□□ 1.55
PNKP-220ENST00000627232 PSDA5PKW4 1024 aaPredicted RBP24.71■■□□□ 1.55
PNKP-220ENST00000627232 PHF20L1A8MW92 1017 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 FZD9O00144 591 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 PBX1P40424 430 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 MCM6Q14566 821 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 UNC13DQ70J99 1090 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 TEPSINQ96N21 525 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 THAP9Q9H5L6 903 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 STK24Q9Y6E0 443 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 BICDL2A1A5D9 508 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 R3HDM1Q15032 1099 aaKnown RBP24.71■■□□□ 1.55
PNKP-220ENST00000627232 NUDT12Q9BQG2 462 aa24.71■■□□□ 1.55
PNKP-220ENST00000627232 ITIH6Q6UXX5 1313 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 CCNE1P24864 410 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 GMPSP49915 693 aaPredicted RBP24.7■■□□□ 1.54
PNKP-220ENST00000627232 KRT31Q15323 416 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 TCP11X2Q5H9J9 407 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 FCHSD1Q86WN1 690 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 ETNPPLQ8TBG4 499 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 FAM20AQ96MK3 541 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 MAPK8IP1Q9UQF2 711 aa24.7■■□□□ 1.54
PNKP-220ENST00000627232 MRPL11Q9Y3B7 192 aaKnown RBP24.7■■□□□ 1.54
PNKP-220ENST00000627232 MYMKA6NI61 221 aa24.69■■□□□ 1.54
PNKP-220ENST00000627232 KCNJ18B7U540 433 aa24.69■■□□□ 1.54
PNKP-220ENST00000627232 CCP110O43303 1012 aa24.69■■□□□ 1.54
PNKP-220ENST00000627232 CCT6AP40227 531 aaKnown RBP24.69■■□□□ 1.54
PNKP-220ENST00000627232 COPB1P53618 953 aaKnown RBP24.69■■□□□ 1.54
PNKP-220ENST00000627232 KCNJ12Q14500 433 aa24.69■■□□□ 1.54
PNKP-220ENST00000627232 MICALL2Q8IY33 904 aa24.69■■□□□ 1.54
PNKP-220ENST00000627232 ABCB11O95342 1321 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 TEX33O43247 280 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 EEF1GP26641 437 aaKnown RBP24.68■■□□□ 1.54
PNKP-220ENST00000627232 PSMD2Q13200 908 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 TTI2Q6NXR4 508 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 P2RX5Q93086 422 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 KIFC2Q96AC6 838 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 LENG9Q96B70 501 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 SMCHD1A6NHR9 2005 aa24.68■■□□□ 1.54
PNKP-220ENST00000627232 TNNT1P13805 278 aa24.67■■□□□ 1.54
PNKP-220ENST00000627232 RASSF7Q02833 373 aa24.67■■□□□ 1.54
PNKP-220ENST00000627232 E4F1Q66K89 784 aaPredicted RBP24.67■■□□□ 1.54
PNKP-220ENST00000627232 NYAP1Q6ZVC0 841 aa24.67■■□□□ 1.54
PNKP-220ENST00000627232 TC2NQ8N9U0 490 aa24.67■■□□□ 1.54
PNKP-220ENST00000627232 MYRIPQ8NFW9 859 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms